Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10 161 1e-34 seq5 129 7e-25 >seq10 Length=23202889 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | |||||| ||||| || | || |||||| ||||| |||||||||| Sbjct 4416082 TGCCTCCTCTGAGACGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 4416023 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || |||||||| |||||||| |||| ||||||||||| | | Sbjct 4416022 AGAGAGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGGGG 4415963 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| |||||| ||| | || | | |||||||| | |||| Sbjct 4415962 GGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCA 4415903 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| || || || || ||||| || ||||| ||||| Sbjct 4415902 CCTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 Score = 159 bits (176), Expect = 4e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||||| || | || |||||| ||||| ||||||||||| Sbjct 4415852 CCTCCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4415793 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||||||||| |||| ||||||||||| | || Sbjct 4415792 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4415733 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| |||| | | | |||||||| | ||||| Sbjct 4415732 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 4415673 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| || || ||||| || || |||||||| ||||| ||| Sbjct 4415672 TCCAAGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTG 4415622 Score = 149 bits (164), Expect = 7e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| || ||||| || | ||| | |||||| || | || |||||| ||||| |||| Sbjct 4416316 ATTAGTTTCCTCCCCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 4416257 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 ||||||| |||||||| | || || ||||||||||| ||||| |||| |||||||||| Sbjct 4416256 AGTCGGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGT 4416197 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 | | || | || |||||| ||| |||||| |||| | | | |||||||| | Sbjct 4416196 CTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGG 4416137 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||||| || || || || ||||| || ||||| ||||| Sbjct 4416136 GCTCCACCTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4416082 >seq5 Length=28395245 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || || | ||||| || ||||| | || |||||| ||||| ||||| Sbjct 9215356 TTATTGACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTA 9215415 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || ||||| | || || ||||||||||| || || |||| | |||||| || Sbjct 9215416 GTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATC 9215475 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| |||||| ||| | || | | |||||||| | Sbjct 9215476 AGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGG 9215535 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 9215536 CTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 9215589 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | || |||||| ||||| |||||||| || Sbjct 9219823 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 9219882 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | |||||| || | || Sbjct 9219883 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 9219942 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | |||||||| | || || Sbjct 9219943 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACC 9220002 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 9220003 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 9220049 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || ||||| | || |||||||||||| |||||||| | Sbjct 9220049 TGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAG 9220108 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 9220109 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 9220168 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | |||||||| | || | Sbjct 9220169 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGA 9220228 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 9220229 CCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220277 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | || |||||||||||| |||||||| || Sbjct 9220279 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 9220338 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | |||||| || | || Sbjct 9220339 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 9220398 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | |||||||| | || || Sbjct 9220399 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACC 9220458 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 9220459 TCGAGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220505 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || ||||| | || |||||| ||||| |||||||| | Sbjct 9215589 TGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 9215648 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 9215649 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 9215708 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | |||||||| | || | Sbjct 9215709 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGA 9215768 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| || || ||||| || ||||| ||||| ||||| Sbjct 9215769 CCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9215817 Score = 120 bits (132), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | || |||||||||||| |||||||| || Sbjct 9220507 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 9220566 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | |||||| || | || Sbjct 9220567 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 9220626 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | || ||||| | || || Sbjct 9220627 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCGACC 9220686 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 || | |||||||| ||||| || || || || |||||||| ||||| ||||| Sbjct 9220687 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGC 9220739 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | || |||||| ||||| |||||||| || Sbjct 9215819 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 9215878 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | |||||| || | || Sbjct 9215879 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 9215938 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | || || || | || || Sbjct 9215939 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCACTTGGCTCGACC 9215998 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCAC 46600 || | |||||||| ||||| || || || || |||||||| ||||| ||||||| Sbjct 9215999 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGCAC 9216053 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| || ||||| | || |||||| ||||| |||||||| || Sbjct 9219595 CCACCCCTCAGACGCAGGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAG 9219654 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | |||||| || | || Sbjct 9219655 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 9219714 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | |||||||| | || || Sbjct 9219715 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACC 9219774 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || || || || || |||||||| |||||| Sbjct 9219775 TCGAGGGTGATGGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCATT 9219822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238223363000