Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10 149 6e-31 seq5 141 9e-29 seq8 109 5e-19 >seq10 Length=23202889 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || || || ||||||||| | || || ||| || Sbjct 4415623 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCCC 4415682 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||||| | | ||| | |||| || |||| ||||| ||||| || ||| | ||| Sbjct 4415683 AGCGACACCATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCAGAC 4415742 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||||||| ||||||| Sbjct 4415743 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 4415802 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || || || ||||||| ||| ||||||| || Sbjct 4415803 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGGAGG 4415852 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| || || ||||||||| | || || ||| ||| | Sbjct 4416082 ATGCAGATCTTCGTCAAAACCCTCACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 4416141 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| || |||| || || ||||| || ||| | ||||| Sbjct 4416142 GACACCATTGAAAATGTCAAAGCTAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 4416201 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||| ||| |||||||||| Sbjct 4416202 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCCGACTACAAC 4416261 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || ||||||| ||| |||| || || Sbjct 4416262 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGGGGAGG 4416308 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| || || ||||||||| | || || ||| ||| | Sbjct 4415854 ATGCAGATCTTCGTCAAAACCCTCACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGC 4415913 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || ||| | ||||| Sbjct 4415914 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCA 4415972 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| || | ||||| ||| ||||||||| Sbjct 4415973 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACTCTCTCCGACTACAA 4416032 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||| ||||| | ||||| ||| Sbjct 4416033 CATCCAGAAGGAGTCCACCCTCCACCTGGTCTTGCGTCTCAGAGGAGGC 4416081 >seq5 Length=28395245 Score = 141 bits (156), Expect = 9e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||| ||||||||| |||| |||||| | Sbjct 9220737 AAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCC 9220678 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||| | | | | |||| | || | || |||| ||||| || || |||||| | | Sbjct 9220677 CAGCGATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTG 9220619 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||| |||| || | || ||||| |||||||| || | ||||||||| |||| Sbjct 9220618 ATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACT 9220559 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||||| | || || ||| | || |||||| | || || || Sbjct 9220558 ACAACATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9220507 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| || || ||||||||| |||| |||||| ||| Sbjct 9219822 AATGCAGATCTTTGTCAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCGAGCCCAG 9219763 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | || |||| ||||| || || |||||| | || | Sbjct 9219762 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATC 9219704 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||| Sbjct 9219703 AGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACA 9219644 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || ||| | || |||||| |||| || || Sbjct 9219643 ACATCCAGAAGGAGTCAACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 9219595 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| |||| |||||| ||| | Sbjct 9220277 ATGCAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 9220218 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 9220217 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9220159 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 9220158 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9220099 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || || ||| | || |||||| | || || ||| Sbjct 9220098 CATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGC 9220050 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| |||| |||||| ||| | Sbjct 9220505 ATGCAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 9220446 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 9220445 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9220387 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 9220386 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9220327 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||| | || |||||| | || || || Sbjct 9220326 CATCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9220279 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| |||| |||||| ||| | Sbjct 9215817 ATGCAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 9215758 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 9215757 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9215699 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| ||||| || || | ||||||||| |||||||| Sbjct 9215698 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAA 9215639 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || ||| | || |||||| | || || ||| Sbjct 9215638 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGGC 9215590 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 9215589 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGC 9215530 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 9215529 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9215471 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 9215470 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9215411 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | || |||||| |||| || || Sbjct 9215410 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 9215363 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| | Sbjct 9220049 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCAGC 9219990 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 9219989 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 9219931 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 9219930 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 9219871 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | || |||||| | || || || Sbjct 9219870 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9219823 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||| ||||||||| |||| |||||| | Sbjct 9216049 AAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCC 9215990 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | || | | | | |||| | || | || |||| ||||| || || |||||| | | Sbjct 9215989 AAGTGATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTG 9215931 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||| |||| || | || ||||| |||||||| || | ||||||||| |||| Sbjct 9215930 ATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACT 9215871 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| | || || ||| | || |||||| | || || || Sbjct 9215870 ACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAGGGGTGG 9215819 >seq8 Length=22893611 Score = 109 bits (120), Expect = 5e-19 Identities = 99/122 (81%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| || |||| |||||| |||| Sbjct 22891377 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAACGCCAACACGTGAGAGATG 22891318 Query 133339 AAATGGCGCTCGTTGTCGTTCA-AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || | | ||| | ||| |||| ||| |||||||| || |||||||||||| ||||| Sbjct 22891317 AAGTACCTCTCCTCGTCCTTCAGAGC-CTCCCAGTGCTGCAGGTCCTTGGACAGATCCAC 22891259 Query 133398 CT 133399 || Sbjct 22891258 CT 22891257 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||| ||||||| ||||| || ||||| | ||||||||||||||| || || Sbjct 22891717 GTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 22891658 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || |||| ||||| |||||||||||| || | ||| ||||| ||| Sbjct 22891657 ACCATAGAAACACCTGGCCTCCGTCACCTGCACTTCCTGGGAGAAGCGCTCCACC 22891603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 |||||||| ||||||| || ||||||||||| || |||||||| ||| ||||| Sbjct 22891107 ACCTCCTCTGCGGTCCAGAAAGACGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 22891048 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || | ||||| || || || || ||||| |||||||| || |||||||||| Sbjct 22891047 TACTTGATGGGGAAGATGACGAAGCGGCGAGGGTTTTCCTTCAGCAGCGGCTCC 22890994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172643696000