Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7 118 9e-21 seq4 113 4e-19 seq5 104 2e-16 >seq7 Length=25821574 Score = 118 bits (130), Expect = 9e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||||| Sbjct 12620419 ATGCAGTTATCACAGTTCCTGCGTACTTCAATGACTCTCAGCGTCAAGCCACCAAAGATG 12620360 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || ||||| |||||||| || || || |||||||| || |||||||| || Sbjct 12620359 CTGGAGCCATCGCTGGGCTTAATGTACTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 12620300 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 12620299 TTGCTTATGGCCTGGACAAA 12620280 >seq4 Length=27622843 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| || || || || |||||||| || || || || || ||||||| Sbjct 19764019 ATGCTGTAGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 19764078 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| |||||||| ||||||||||| ||||||||||| Sbjct 19764079 CAGGGACCATTTCTGGGCTGAATGTCCTTCGTATCATCAATGAACCGACTGCTGCTGCTA 19764138 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 19764139 TTGCCTATGGTCTGGACAAA 19764158 >seq5 Length=28395245 Score = 104 bits (114), Expect = 2e-16 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||||||||| || |||||||| ||||| ||| | ||| || ||||| |||| || Sbjct 9215596 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGG 9215653 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||||||| || || || ||||| || || || ||||||||||| ||||| Sbjct 9215654 GTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 9215713 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || || || || || || || |||||| || || || | ||| Sbjct 9215714 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCG 9215773 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || |||||||| || || |||||||| || |||||| Sbjct 9215774 AGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCATA 9215818 Score = 104 bits (114), Expect = 2e-16 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||||||||| || |||||||| ||||| ||| ||||| || ||||| |||| || Sbjct 9220056 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGG--ATGTTGTAGTCAGAGAGG 9220113 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || || ||||||||||| ||||| Sbjct 9220114 GTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 9220173 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || || || || || || || |||||| || || || | ||| Sbjct 9220174 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCG 9220233 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || |||||||| || || |||||||| || |||||| Sbjct 9220234 AGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCATA 9220278 Score = 104 bits (114), Expect = 2e-16 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||||||||| || |||||||| ||||| ||| ||||| || ||||| |||| || Sbjct 9220284 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGG--ATGTTGTAGTCAGAGAGG 9220341 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || || ||||||||||| ||||| Sbjct 9220342 GTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 9220401 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || || || || || || || |||||| || || || | ||| Sbjct 9220402 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCG 9220461 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || |||||||| || || |||||||| || |||||| Sbjct 9220462 AGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCATA 9220506 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||||||||| || |||||||| ||||| ||| ||||| || ||||| |||| || Sbjct 9220512 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGG--ATGTTGTAGTCAGAGAGG 9220569 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || || ||||||||||| ||||| Sbjct 9220570 GTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 9220629 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || || || || || || || |||||| ||||| || | ||| Sbjct 9220630 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCGACCTCG 9220689 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || || || || ||||| Sbjct 9220690 AGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 9220733 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || ||||| ||||||||||| ||||||||||| || || |||| Sbjct 4338472 ATGCTGTTATCACAGTGCCTGCATACTTTAATGACTCTCAACGTCAAGCAACCAAGGATG 4338413 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||| |||| || ||||| | | || || || || || ||||| || || Sbjct 4338412 CTGGAACTATCTCTGGTCTAAATGTGTTGAGAATAATTAACGAGCCCACTGCAGCAGCTA 4338353 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 4338352 TTGCTTATGG-CTTG 4338339 Score = 91.5 bits (100), Expect = 1e-12 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||||||||| || |||||||| ||||| ||| | ||| || ||||| |||| || Sbjct 9215824 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGG 9215881 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || || ||||||||||| ||||| Sbjct 9215882 GTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 9215941 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| || || || || || || || |||||| |||||| | || | | || Sbjct 9215942 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCACT-TGGCTCGACCTC 9216000 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || ||||| || || || || || || ||||| Sbjct 9216001 GAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 9216045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294677887250