Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq9 149 5e-31 seq14 114 1e-20 >seq9 Length=16453912 Score = 149 bits (164), Expect = 5e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | |||||||| || || || || Sbjct 11070861 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 11070802 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 |||||||| ||||| || ||||| | |||||| ||||||||||| ||||| ||||| | | Sbjct 11070801 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAC 11070742 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 ||||| |||||||||| || |||||| || || ||||||||| Sbjct 11070741 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATG 11070700 Score = 147 bits (162), Expect = 2e-30 Identities = 144/182 (79%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||| || || || ||||||||||||||||||||||| ||||||||||| Sbjct 11069773 CATGTTTGTGTACTCGGCACCAAAGTGCCTCCACTGGAACCCGTACACAGGTCCCAGGTC 11069714 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || |||| ||| || ||||||| ||||| | ||| |||||||| || Sbjct 11069713 GCCTTCCTCTCTGTCTGTGAACCCGAGGTTGTCCAGGAAGTCCCGGGATCCGTTGGCATC 11069654 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 ||||||||| || || ||| | ||||||||||||| ||||| || || ||| || |||| Sbjct 11069653 CCAGATCTTCACACCTTTCGCCGAGAGCTCTTTGGCATTTGTTGATCC-CTG-CG-ACCA 11069597 Query 30330 CA 30331 || Sbjct 11069596 CA 11069595 >seq14 Length=28398722 Score = 114 bits (126), Expect = 1e-20 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||||||||||||||| | ||| ||||||| ||||||| || ||||| || |||||||| Sbjct 25721086 CTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGCCTGTTCTTCTCTGGGATGGA 25721027 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| ||||| || ||||| |||||||| |||||||||||| Sbjct 25721026 AAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 25720984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617475499325