Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 228 2e-54 seq8 105 1e-17 seq5 91.5 3e-13 seq23 87.8 3e-12 >seq4 Length=27622843 Score = 228 bits (252), Expect = 2e-54 Identities = 822/1271 (65%), Gaps = 36/1271 (3%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425 || ||||||| ||||||||| ||| | | ||| | |||| | | |||||| Sbjct 17919787 CCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGCG 17919728 Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAG 221485 |||| |||||||||||||||||| |||| || || ||||| || ||| Sbjct 17919727 GCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAAC 17919668 Query 221486 GGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTG 221545 || |||| | ||| |||| |||| ||||| || ||||| ||||| |||||| Sbjct 17919667 GGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCTG 17919608 Query 221546 TGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 || | | ||||||| ||||||| ||||| || || |||| | ||||| | ||| Sbjct 17919607 TGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTTG 17919548 Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665 || | ||| ||| ||||| ||| | | || || || || ||| Sbjct 17919547 TTCAAGTTTTTGACGATTACTTTGGTCAC-------AAATGCTAGTTTTTTAAAGTCAAA 17919495 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 |||| || |||||| | | | | || || || | | |||||| |||||| Sbjct 17919494 AGTCCGC--TC----AGGGGTGACGTACATG--TTGAGCGCGATGGAGGCCAGATTACAC 17919443 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || || ||||| || | | |||| |||| | || ||||| ||||||||||||| ||| Sbjct 17919442 ACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTG 17919383 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 ||||| ||||| | | || || ||| | ||| ||||| ||||| ||||| | Sbjct 17919382 ATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTAC 17919323 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || || || || ||| | | | | ||| || ||| | | ||| || |||| Sbjct 17919322 GGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTG-CTGAGCCTTCAC 17919264 Query 221905 CGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTC 221964 | | |||||| || || ||| ||||| ||| || ||| | || |||| || Sbjct 17919263 CACGCGCTTGACCCTCCCTTC---CTTCTCATATGTGGTGTAAAGCTTCTCGAACTCCTC 17919207 Query 221965 ACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTT 222024 || | ||||||||| || || ||| | |||||||||||| ||||| |||| Sbjct 17919206 CCCCCAGCACTCGTCCAGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTT 17919147 Query 222025 GTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084 | | || |||| |||||| ||||| |||||||||| || | || || ||||||| Sbjct 17919146 GCTCTCCACTCTCTTCATGAACAGGTCTGGGATCCACATGGCGTAGAAAAGGTCTCTGGC 17919087 Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144 || |||||||||| ||| |||| ||| |||| ||||| || ||||| | || ||| Sbjct 17919086 CCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTG 17919027 Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCAT 222204 ||| |||||||| || | ||| | || ||||| | ||||||||| ||||| || || Sbjct 17919026 CCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTA 17918967 Query 222205 CCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 | | ||| | |||| ||| | || | || || || |||||||| ||||||| Sbjct 17918966 GCGC-GCAGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGG 17918908 Query 222264 TGCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCG 222322 |||| || || | | ||| | | || | | ||| | | || ||| || || ||| Sbjct 17918907 TGCCGGCGATATAGCTCCCCGTC-GATCTGATGCAGCTGACCGCCACGCCAATTCCCCCG 17918849 Query 222323 GCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCC 222382 || || ||||| | ||| || ||| || ||||| ||||| || || ||| Sbjct 17918848 GCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCG 17918789 Query 222383 TCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAAC 222442 || || | | ||||| || || |||| ||| | || ||| | ||||| || Sbjct 17918788 TCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAG 17918729 Query 222443 AGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACT 222502 ||||| || ||||| || || | | |||| ||| | ||||||||| | | || Sbjct 17918728 AGCGTAGGGGAAGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCT 17918669 Query 222503 CTGGCGATGTTGTCC---CCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGC 222559 ||| || ||||| ||| ||| | | ||||||| ||||| ||| || Sbjct 17918668 ---GCGTTGATGTCCGTTTTGTGGATCCCAACAGATACTCTCATGAGCATGTGCTGCGGA 17918612 Query 222560 CTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAAC 222616 | || |||| || || || || | |||||| || ||||| ||||||||| Sbjct 17918611 CGCTCGGCCACTTTGCCGTT-GATCT--TCAACAGGTAGGACCGCTCCAGGGTCTTGAAC 17918555 Query 222617 CCAAAGTAGTT 222627 || ||| |||| Sbjct 17918554 CCGAAGAAGTT 17918544 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || ||||| ||| | |||| || ||| ||||| | Sbjct 17920079 CATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACGAT 17920020 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| ||||||||||| | ||| | ||| ||| | | ||||||| Sbjct 17920019 CTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGA 17919960 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 17919959 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 17919900 Query 221245 GTT 221247 ||| Sbjct 17919899 GTT 17919897 >seq8 Length=22893611 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| || || |||||||| ||||| ||| ||||| || || Sbjct 22892063 GGTGAGCGCGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCT 22892122 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || ||||||||||| || ||| || |||||||| ||| ||| ||||||||||| Sbjct 22892123 GCGATCTTCTGGCTGAAAAAGAGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTG 22892182 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 22892183 ATCAGCAGAGACGAGG 22892198 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || |||| || ||||||||||||||||| ||| Sbjct 22893369 AACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAG 22893428 Query 26305 AGGGTCGGCGACTATCA 26321 |||||||||| || || Sbjct 22893429 CGGGTCGGCGAGTACCA 22893445 >seq5 Length=28395245 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||||||||| ||||| | ||| | ||| ||| | || || ||| Sbjct 12622137 ACCTGAAACTCTCCCGAGAGTACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 12622196 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| Sbjct 12622197 GACTCGTTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 12622256 Query 221243 CTGTT 221247 ||||| Sbjct 12622257 CTGTT 12622261 >seq23 Length=22362490 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || ||||| || |||||||| ||||| ||| ||| || || || Sbjct 14674648 GGGGAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATCTTCTTCTCCGGCTCATTCGCT 14674707 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTACTTTTCCAACGAGCT 25991 ||||| | ||||||||| ||| | |||| | |||| || || || ||||||||||| Sbjct 14674708 GCCATTTATTGGCTCAAGAAGA-GAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCT 14674766 Query 25992 CATCAGCAGGGACGAGG 26008 || |||||||| |||| Sbjct 14674767 GATTAGCAGGGATGAGG 14674783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844509736000