Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq15 154 1e-31 seq5 107 1e-17 seq7 105 4e-17 seq4 87.8 1e-11 seq10 86.0 4e-11 >seq15 Length=26439989 Score = 154 bits (170), Expect = 1e-31 Identities = 364/545 (67%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| |||||| | || || || || |||||| | ||||| || |||| ||||| Sbjct 13914745 ATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGTGTTTTCCAGCATGGCAAAGTG 13914686 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| ||||| || || ||||| || || ||||| | || ||||| Sbjct 13914685 GAGATCATCGCCAACGACCAGGGCAACAGAACCACTCCCAGCTATGTGGCCTTCACTGAC 13914626 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || || |||||||||||||| || | || | ||| || || || || Sbjct 13914625 ACAGAGAGGCTCATTGGAGATGCTGCAAAGAACCAGGTTGCCATGAACCCGACCAACACA 13914566 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | ||||| |||||| | | || || | || ||| | || ||| ||||| ||||| Sbjct 13914565 GTCTTTGACGCTAAACGTCTCATCGGGAGAAAGTTTAACGACTCCATCGTCCAGTCTGAC 13914506 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCAA 474629 ||| | ||||| || |||||||| | || | ||| || || | | || | Sbjct 13914505 ATGAAACTCTGGCCATTCAAGGTGATCAGTGATAATGGAAAGCCCAAAGTCCAGGTTGAG 13914446 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 || | ||| || ||||| || | || || |||| || || ||||| | | | Sbjct 13914445 TATA--AAGGAGAGACTAAGGCCTTCTACCCAGAGGAAATCTCCTCCATGGTCCTGGTTA 13914388 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 ||||||| | | ||| ||| | || || |||||| |||| | |||| || || || Sbjct 13914387 AAATGAAGGAGATCGCTGAG-GCCTACCTGGGACAAAAAGTGTCAAATGCGGTCATCACA 13914329 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 |||||||| ||||| || || || || | ||||| || || ||||| || || | Sbjct 13914328 GTTCCAGCTTATTTCAACGACTCCCAGAGGCAAGCCACCAAGGATGCCGGGGTGATCTCT 13914269 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || |||||| || | || || ||||| || |||||||| || ||||||| || || Sbjct 13914268 GGACTGAATGTTCTAAGGATCATCAATGAGCCCACAGCAGCAGCCATTGCTTACGGCCTG 13914209 Query 474869 GATAA 474873 || || Sbjct 13914208 GACAA 13914204 Score = 129 bits (142), Expect = 4e-24 Identities = 520/810 (64%), Gaps = 12/810 (1%) Strand=Plus/Minus Query 475363 AGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCA 475420 ||| || || ||||| |||| ||||| || || |||||||| || | | || | || Sbjct 13914104 AGCCACCGCGGGAGACACACACCTTGGCGGGGAGGATTTTGACAACCGGATGGTCAACCA 13914045 Query 475421 TGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAG 475478 | |||||| || ||||| || ||| | || || ||| ||| || | | || Sbjct 13914044 C--TTTGTTGAGGAATTCAAAAGAAAACACAAGAAGGACATCAGCCAAAATAAG--AGAG 13913989 Query 475479 CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTC 475538 || | || | || | || |||||||| | || ||| | | || || || || | Sbjct 13913988 CAGTGAGGAGGCTGCGCACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCCAGCACCC 13913929 Query 475539 AAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACA 475597 | ||| |||| |||| ||||| ||||| || || || || || ||| || ||| Sbjct 13913928 AGGCTAGCATTGAGATTGACTCTCTGTTTGAGGGCATCGACTTCTACACCTCC-ATCACA 13913870 Query 475598 AGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAA 475657 ||||| ||||| || | ||||| || || || |||| | ||||| || || Sbjct 13913869 AGGGCACGCTTTGAGGAGCTCAACTCTGAGCTTTTCAGGGGAACACTGGAACCAGTAGAG 13913810 Query 475658 CAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGA 475717 | | || |||| | || || || || ||| |||||||||||| || || || || Sbjct 13913809 AAGGCCCTGCAAGATGCCAAGCTGGATAAGTCAAGAGTCCATGAAATAGTCCTGGTTGGT 13913750 Query 475718 GGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAA 475776 ||||| ||||||||||| ||||| |||| ||| || | | ||||||||| | | Sbjct 13913749 GGTTCCACAAGAATTCCCAAAAT-CCAGAAGCTCTTGCAGGACTTTTTTAATGGCAGGGA 13913691 Query 475777 GTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGC 475836 | || | || | || || |||||||| || || || || ||||||||||| || || Sbjct 13913690 CCTGAACAAGAGCATCAACCCAGATGAAGCCGTGGCCTACGGTGCTGCTGTCCAGGCTGC 13913631 Query 475837 TATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCC 475896 ||| | ||| | | ||||| | | || | | || ||||||| |||| Sbjct 13913630 TATCCTCATGGGTGACACTTCAGAGAACGTCCAAGATCTGCTGCTGCTTGACGTGGCTCC 13913571 Query 475897 ACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATAC 475956 || || | || |||| || | || || ||||||| || || | | || || Sbjct 13913570 CCTGTCTCTGGGCATTGAGACTGCAGGTGGAGTTATGACGCCCCTAATCAAACGCAACAC 13913511 Query 475957 TCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGT 476016 | ||||| ||| | | | | || ||||| || || ||||| || || ||| Sbjct 13913510 CACCATCCCCACCAAGCAGACCCAGATCTTCTCCACATACTCGGATAACCAGCCAGGTGT 13913451 Query 476017 AACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAAC 476076 || || | | || ||||| ||| | || || || || ||| || || | Sbjct 13913450 GCTGATTCAGGTGTACGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAA 13913391 Query 476077 TTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTT 476136 ||| | || |||||| ||||| |||||| |||| || || || | || || ||||| Sbjct 13913390 GTTTGAGCTCACAGGTATCCCTCCCGCTCCCCGAGGTGTACCACAGGTGGAGGTAACTTT 13913331 Query 476137 TGATATTGATGCAAATGGTATTCTTAATGT 476166 || || ||||| || || ||||| ||||| Sbjct 13913330 CGACATCGATGCCAACGGCATTCTGAATGT 13913301 >seq5 Length=28395245 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || ||||| |||||||| ||||||||||||||||| || |||| Sbjct 4338472 ATGCTGTTATCACAGTGCCTGCATACTTTAATGACTCTCAACGTCAAGCAACCAAGGATG 4338413 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | ||||| ||||| || | || ||||| || || || ||||| || Sbjct 4338412 CTGGAACTATCTCTGGTCTAAATGTGTTGAGAATAATTAACGAGCCCACTGCAGCAGCTA 4338353 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | || ||||| Sbjct 4338352 TTGCTTATGGCTTGGACAAGAA 4338331 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || || || | || || |||| || || | | Sbjct 9215600 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 9215659 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||||||| ||||| |||||||| || || | || |||||||| ||||| |||||| Sbjct 9215660 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 9215719 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || || ||||| || || || | || ||||| Sbjct 9215720 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTG 9215779 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || ||||||||||| || || Sbjct 9215780 ATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTG 9215814 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTC 480612 ||||| || |||||||| || || ||| ||| || || || |||| || || | Sbjct 9220060 AGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATG--TTGTAGTCAGAGAGGGTGC 9220117 Query 480613 TGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTT 480672 | |||||| || ||||| |||||||| || || | || |||||||| ||||| |||| Sbjct 9220118 GGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTT 9220177 Query 480673 CCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGG 480732 ||||||| || ||||| || || ||||| || || || | || |||| Sbjct 9220178 CCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGG 9220237 Query 480733 TAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| || || ||||||||||| || || Sbjct 9220238 TGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTG 9220274 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTC 480612 ||||| || |||||||| || || ||| ||| || || || |||| || || | Sbjct 9220288 AGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATG--TTGTAGTCAGAGAGGGTGC 9220345 Query 480613 TGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTT 480672 | |||||| || ||||| |||||||| || || | || |||||||| ||||| |||| Sbjct 9220346 GGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTT 9220405 Query 480673 CCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGG 480732 ||||||| || ||||| || || ||||| || || || | || |||| Sbjct 9220406 CCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGG 9220465 Query 480733 TAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| || || ||||||||||| || || Sbjct 9220466 TGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTG 9220502 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || || || | || || |||| || || | | Sbjct 9219604 AGACGCAGGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 9219663 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| |||||||| || || | || |||||||| ||||| |||||| Sbjct 9219664 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 9219723 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || || ||||| || || || | || ||||| Sbjct 9219724 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTG 9219783 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||| ||||| || || || || Sbjct 9219784 ATGGTCTTACCGGTGAGGGTCTTGACAAAGATCTG 9219818 >seq7 Length=25821574 Score = 105 bits (116), Expect = 4e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||| ||||| ||| | || || || ||||||| || || | ||| | || || Sbjct 12619165 TGAGGGTGAGAGAGCCATGACCAAGGACAATAACATTCTGGGCAAGTTTGAGCTGACCGG 12619106 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| |||||||| ||||| || || ||||| |||||||| || Sbjct 12619105 TATTCCACCTGCTCCCAGAGGTGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 12619046 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||||||||| ||||| |||| Sbjct 12619045 TGGTATTCTGAATGTATCTGC 12619025 >seq4 Length=27622843 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || ||||| ||| || |||| || | ||| |||| ||| Sbjct 19763273 GCAGTCGGCATTGATCTGGGCACTACCTACTCCTGCGTAGGAGTGTTTCAACATGGCAAA 19763332 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||||||||| || || || || || |||||| | || ||| Sbjct 19763333 GTTGAAATCATTGCCAATGACCAAGGAAACAGGACCACGCCCAGTTATGTTGCCTTCACT 19763392 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 || || || || ||||| ||||| || || |||| Sbjct 19763393 GACACAGAGAGGCTGATTGGGGATGCAGCCAAGAATCA 19763430 >seq10 Length=23202889 Score = 86.0 bits (94), Expect = 4e-11 Identities = 121/167 (72%), Gaps = 5/167 (3%) Strand=Plus/Minus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 ||||||| || || || || ||||||||||| ||||| | | || ||||| |||| Sbjct 12828850 AAAATGGCCGTGTGGAGATCATCGCCAATGACCAGGGTAACCGCATCACCCCATCGTATG 12828791 Query 474438 TTTCTTTTA---CTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CA 474493 | | |||| |||| ||| | ||| ||||| |||||||| || ||| ||||| | Sbjct 12828790 TGGCCTTTACTGCTGAGGGTGAGCGTCTGATTGGTGATGCTGCCAAGAATC-AGCTGACC 12828732 Query 474494 TCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 ||||| |||| || || | |||||||| || || |||||||| || Sbjct 12828731 TCTAACCCTGAGAACACCGTCTTTGATGCCAAGAGGTTGATTGGGCG 12828685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178127628700