Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 174 2e-38 seq5 107 2e-18 seq23 87.8 2e-12 >seq4 Length=27622843 Score = 174 bits (192), Expect = 2e-38 Identities = 656/1008 (65%), Gaps = 27/1008 (3%) Strand=Plus/Plus Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 ||||| || || | || ||||||| |||||||| ||||||||| | || ||| Sbjct 17919090 AGAGACCTTTTCTACGCCATGTGGATCCCAGACCTGTTCATGAAGAGAGTGGAGAGCAAC 17919149 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGA 75804 | |||||||| | ||||| || || || || || ||| || | ||| || Sbjct 17919150 ACAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCTGGGCTGGACGAGTGCTGGGGG-GA 17919208 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACC 75864 |||||| || || ||||| | ||||| |||| || || | ||| ||| || Sbjct 17919209 GGAGTTCGAGAAGCTTTACACCACATATGAGAAGGAAGGGAGGGTCAA-GCGCGTGGTGA 17919267 Query 75865 AGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 || | | | | || ||| | || ||| || | || ||||| || || || || || || | Sbjct 17919268 AGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGTACGCCGTACA 17919327 Query 75924 TGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGA 75983 |||| ||||| || || || |||| |||||| ||||| ||||| |||| || ||||| | Sbjct 17919328 TGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAA 17919387 Query 75984 GCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCA 76043 || || || ||||| ||||| | |||||||| | |||||| || || || | Sbjct 17919388 GCAGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTA 17919447 Query 76044 ATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATG 76103 || |||| || ||||| || | ||| |||| ||| || |||||||| | | Sbjct 17919448 ATCTGGCCTCCATCGCGCTCAACATGTACGTCACCCCTGAG---CGGACTTTTGACTTTA 17919504 Query 76104 AAAAACTT-CATGAAATCACAAAG--ATTGTTACCAAAAATCTAAACCGAGTCATTGACA 76160 ||||||| ||| ||||| || || |||||| | ||| | || || | Sbjct 17919505 AAAAACTAGCATTTGTGACCAAAGTAATCGT---CAAAAACTTGAACAAGATTATCGAAA 17919561 Query 76161 GAAATTTTTATCCCGTTGAGACTGC-GCGAA--AGTCTAATATGCGACACAGACCTATTG 76217 || | || || || | ||| ||| | |||| || | ||| ||||| || || | Sbjct 17919562 TTAACTACTACCCAGT---GCCTGAAGCGGAGAAGTCCAACAAGCGCCACAGGCCGATCG 17919618 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAG 76277 | | || || || ||| | || || | || || | |||||| | || || Sbjct 17919619 GAATCGGCGTCCAGGGTTTGGCAGACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGCC 17919678 Query 76278 ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG 76337 ||| || || | |||| || |||||||| ||||| || |||| ||||||||| Sbjct 17919679 CTGAGGCTCAGCTGCTGAACATTCAAATCTTTGAGACCATCTACTACGCCGCCCTGGAGG 17919738 Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397 |||| || || |||||| | | || |||| ||||| | || || || |||| || Sbjct 17919739 CGAGCTGCGAGCTGGCTGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTC-CCCG-GT 17919796 Query 76398 CC-CAAGGGG-TGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GAC 76453 | |||||| | || |||| || |||||||| | || || | | | || | ||| Sbjct 17919797 CAGCAAGGGCATCCTCCAGTACGACATGTGGGA-GAAGACGCCCACCG-ACCTGCTGGAC 17919854 Query 76454 TGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCA 76513 ||| | || || ||||| ||| || | || | | ||||| || || |||| Sbjct 17919855 TGGAAGGTCCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCC 17919914 Query 76514 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATAC 76573 || ||||| || ||||||||||| || ||| |||| || || || | | | ||| | ||| Sbjct 17919915 CCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTAC 17919974 Query 76574 ACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCAC 76633 || | ||||||||| | || ||| | || |||||| || || || ||| Sbjct 17919975 ACCAGCAACATCTACACCCGCAGGGTGCTCTCTGGAGAGTTTCAGATCGTGAATCCTCAC 17920034 Query 76634 CTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 || |||| ||||| | | ||| || || ||| | |||| |||||| Sbjct 17920035 CTGCTCAAAGACCTGACGGAGAGAGGACTGTGGAGCGAGGAGATGAAG 17920082 >seq5 Length=28395245 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || ||||| ||||| |||||||| || || |||| |||||| Sbjct 12623744 TCTCAGACAGAGACCGGTACGCCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGC 12623685 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| ||||| |||| || ||||| | ||||| |||||||| ||| |||||||| Sbjct 12623684 AACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATTGTAGAGTAC 12623625 Query 76016 ACAGATAAGGATGA 76029 ||| || ||||| Sbjct 12623624 ACAAGCAAAGATGA 12623611 >seq23 Length=22362490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| || | || ||||| |||||||| |||||||||||||| |||||| || Sbjct 14674651 GAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATCTTCTTCTCCGGCTCATTCGCTGCC 14674710 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 ||||||||| | |||||| | || || ||||| ||||| || ||| || || || ||| Sbjct 14674711 ATTTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 14674770 Query 65197 TCCCGAGATGAGG 65209 | | ||||||| Sbjct 14674771 AGCAGGGATGAGG 14674783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569413572000