Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq15 170 1e-36 seq4 111 1e-18 seq7 86.0 5e-11 >seq15 Length=26439989 Score = 170 bits (188), Expect = 1e-36 Identities = 928/1470 (63%), Gaps = 14/1470 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | |||||| ||||| || |||||||| | || || || || || | Sbjct 13913285 TTTGTCGACGGCTGACACATTCAGAATGCCGTTGGCATCGATGTCGAAAGTTACCTCCAC 13913344 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || |||| |||| || ||||| ||| | | ||| | ||||| || Sbjct 13913345 CTGTGGTACACCTCGGGGAGCGGGAGGGATACCTGTGAGCTCAAACTTGCCCAGGAGGTT 13913404 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||||||||| | | || || || | | || || Sbjct 13913405 GTTGTCCTTGGTCATGGCTCTCTCACCCTCGTACACCTGAATCAGCACACCTGGCTGGTT 13913464 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 ||| || || || | || | ||||| | | || || || || ||||| | | | Sbjct 13913465 ATCCGAGTATGTGGAGAAGA-TCTGGGTCTGCTTGGTGGGGATGGTGGTGTTGCGTTTGA 13913523 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | ||||||| ||||| || || || | || ||||| || |||| || |||| Sbjct 13913524 TTAGGGGCGTCATAACTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCAA 13913583 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | || || ||| | ||| | || ||||| || || | || Sbjct 13913584 GCAGCAGCAGATCTTGGACGTTCTCTGAAGTGTCACCCATGAGGATAGCAGCCTGGACAG 13913643 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 ||||||| || || || |||||||| || || | | | || || | | ||||| | Sbjct 13913644 CAGCACCGTAGGCCACGGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCCCTGCCATTAA 13913703 Query 281835 AAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 |||| | || |||| || | | || ||||| | | || || ||||| | || Sbjct 13913704 AAAAGTCCTGCAAGAGCTTCTGG-ATTTTGGGAATTCTTGTGGAACCACCAACCAGGACT 13913762 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 |||||||| || ||| |||||||| || | ||| | | || || || ||||| Sbjct 13913763 ATTTCATGGACTCTTGACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCTACTGGTTCC 13913822 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | || || | || || || || || || || || || || || Sbjct 13913823 AGTGTTCCCCTGAAAAGCTCAGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATGGAGG 13913880 Query 282014 T-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 | || || || || || || |||| ||| |||| ||||| ||| || || || | Sbjct 13913881 TGTAGAAGTCGATGCCCTCAAACAGAGAGTCAATCTCAATGCTAGCCTGGGTGCTGGAGG 13913940 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 282131 | || | | || || | ||||| ||||| | || || | | ||| | || ||| Sbjct 13913941 ACAGGGTCCTCTTCGCTCTCTCACAAGCTGTGCGCAGCCTCCTCACTGCTCT--CTTATT 13913998 Query 282132 --GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 | | | || | || | |||||| ||||| || |||||| | | || | || Sbjct 13913999 TTGGCTGATGTCCTTCTTGTGTTTTCTTTTGAATTCCTCAACAAAGTGGTTGACCATCCG 13914058 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || |||||||| || || || | | || | ||| | || ||| | || | || | Sbjct 13914059 GTTGTCAAAATCCTCCCCGCCAAGGTGTGTGTCTCCCGCGGTGGCTTTCACCTCAAAGAT 13914118 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||| |||| | || | | || ||| ||| || ||||| | |||||| || || Sbjct 13914119 GCCATCCTCAATGGTCAGGATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAG 13914178 Query 282310 TACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || || | | | | | || ||| || || || || |||| || || || || | Sbjct 13914179 CACGTTGCGCTCCCCTCTTTTACCTTTG-TCCAGGCCGTAAGCAATGGCTGCTGCTGTGG 13914237 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || || | |||||| || |||| || || ||||| || ||||||| Sbjct 13914238 GCTCATTGATGATCCTTAGAACATTCAGTCCAGAGATCACCCCGGCATCCTTGGTGGCTT 13914297 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | || || || ||||| ||||| || ||||| || || || |||| || |||| || || Sbjct 13914298 GCCTCTGGGAGTCGTTGAAATAAGCTGGAACTGTGATGACCGCATTTGACACTTTTTGTC 13914357 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | || || || | | ||||||||| | | ||| || || |||| |||| Sbjct 13914358 CCAGGTAGGCCTCAGCGATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCCTCTG 13914417 Query 282549 GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608 | | | ||| | || || ||| || | | | || || | | || Sbjct 13914418 GGTAGAAGGCCTTAGTCTCTCCTTTATACTCAACCTGGACTTTGGGCTTTCCATTATCAC 13914477 Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668 | || || || |||||||| |||||| || || || || | ||| ||||| | || Sbjct 13914478 TGATCACCTTGAATGGCCAGAGTTTCATGTCAGACTGGACGATGGAGTCGTTAAACTTTC 13914537 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 | || || | ||||| || ||||| | || ||||| || || | ||| | || | | Sbjct 13914538 TCCCGATGAGACGTTTAGCGTCAAAGACTGTGTTGGTCGGGTTCATGGCAACCTGGTTCT 13914597 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 | || ||||||||||| || ||||| || || || | ||||| ||||| || | Sbjct 13914598 TTGCAGCATCTCCAATGAGCCTCTCTGTGTCAGTGAAGGCCACATAGCTGGGAGTGGTTC 13914657 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 || || || || || || || || || ||||| |||| || | ||||| |||||| Sbjct 13914658 TGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACACCGACACAAG 13914717 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAATAG 282878 | | || || || | |||||| ||||||| Sbjct 13914718 AATAGGTGGTGCCCAGATCAATGCCAATAG 13914747 >seq4 Length=27622843 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || |||||||| |||| |||||||||||| |||||||| || || | | ||| Sbjct 19764160 TTTTTGTCCAGACCATAGGCAATAGCAGCAGCAGTCGGTTCATTGATGATACGAAGGACA 19764101 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 19764100 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 19764041 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| ||||| | || |||| |||||| Sbjct 19764040 GCAGGCACAGTCACTACAGCATTTGTTAC 19764012 >seq7 Length=25821574 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| ||||||||||||||||| | ||||| || || ||||| ||||| || Sbjct 12619025 GCAGATACATTCAGAATACCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGAACA 12619084 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| |||||||||| || || || | ||| | |||||| | ||||| || || Sbjct 12619085 CCTCTGGGAGCAGGTGGAATACCGGTCAGCTCAAACTTGCCCAGAATGTTATTGTCCTTG 12619144 Query 281546 GTGAATTTTCGTTCACCCTC 281565 || | || |||||||| Sbjct 12619145 GTCATGGCTCTCTCACCCTC 12619164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629172605650