Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 179 4e-40 seq10 104 2e-17 seq5 91.5 1e-13 >seq4 Length=27622843 Score = 179 bits (198), Expect = 4e-40 Identities = 934/1468 (64%), Gaps = 48/1468 (3%) Strand=Plus/Minus Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950 |||| || | |||||||| || | ||||| | | | || | ||||| ||| | | Sbjct 17920029 GATTCACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 17919970 Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 || | ||||| || ||||| | || ||||| |||| || || ||||| |||| Sbjct 17919969 CTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCA 17919910 Query 147011 CCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCC 147070 || || || | || |||| | ||| || ||||||| | ||||||| Sbjct 17919909 GCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCCAGTCCA 17919850 Query 147071 ACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGG 147128 || ||| | ||||||| | |||||||||||||||||| | || ||| | || Sbjct 17919849 GCAGGTCG--GTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGG 17919792 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCACAGCTTGCCTCGA 147187 ||| || |||| |||| ||| || | || |||| || ||||| ||||| | Sbjct 17919791 GGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCAGCCAGCTCGCAGCTCGCCTCCA 17919733 Query 147188 GCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCT 147247 | || | ||||| ||||| || |||||| |||| || | || || ||| | Sbjct 17919732 GGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTT 17919673 Query 147248 CGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAG 147307 || | || |||| || | ||||| || ||||||||||||| |||| ||||| | Sbjct 17919672 CGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCG 17919613 Query 147308 GTCGATGCTTTTCGTTG-----CTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATC 147362 | | || | |||| || |||||| || | |||| |||| ||| || Sbjct 17919612 GCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCAC----TGGG-TAGTAGTTAATTTC 17919558 Query 147363 AATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422 ||||||||||| | ||| || | ||||| || | | ||||| | || || Sbjct 17919557 GATAATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACAAATGCTAGTTTTTTAAAGTC 17919498 Query 147423 ATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGA 147481 | |||||| || | |||||| || ||| | ||||| || |||||||| || | Sbjct 17919497 AAAAGTCCGCTCAGGGGTGACGTAC--AT--GTTGAGCGCGATGGAGGCCAGATTACACA 17919442 Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 | || ||| ||| || | |||||| || ||||| | ||| |||||||||| ||| | Sbjct 17919441 CCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGA 17919382 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || |||| ||| ||||| ||||| |||| ||||| ||||||||| | |||||||||| Sbjct 17919381 TGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACG 17919322 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG---CAGGTCCTGCGCTCGCA 147658 | ||||| || || | | |||||| || || | ||| || || Sbjct 17919321 GCGTACCGGTTTCTGTCTGGGACT---CGATAATGGCGTGCCACACCTGCTGAGCCTTCA 17919265 Query 147659 CC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 || ||| || | || || || || || ||| | | ||| ||||| || Sbjct 17919264 CCACGC-GCTTGACCCTCCCTTCCTTCTCATATGTGGTGTAAAGCTTCTCGAACTCCTCC 17919206 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA-CATGTCGTC 147776 || |||| ||| | || || || |||| | |||||||||||| ||||| ||| | Sbjct 17919205 CCCCAGCACTCGTCCAGCCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTG 17919146 Query 147777 CGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GC 147834 | | | || | ||| ||||| || || | ||||| ||||| | ||| || | || Sbjct 17919145 CTC-TCCACTCTCTTCATGAACAGGTCTGGGATCCACATGGCGTAGAAAAGGTCTCTGGC 17919087 Query 147835 GCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCG 147894 || ||| ||||| || |||| |||| | | | | | | | ||| | Sbjct 17919086 CCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAG 17919029 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951 |||||||| || | ||| | ||| | ||| || | | || || ||||||||||| Sbjct 17919028 TGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACG 17918969 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | |||| | ||||||| | || | || |||||| | || ||| | | |||||||| Sbjct 17918968 TAGCGCGCAGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTG 17918909 Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTA-----ACGCCAATGC 148066 ||| ||| | ||| || || ||| | | |||| | | |||||||| | Sbjct 17918908 GTGCCGGCGATATAGCT-CCCCG---TCG-ATCTGATGCAGCTGACCGCCACGCCAATTC 17918854 Query 148067 CGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGC 148126 | ||| | |||| || ||| || || | || || ||| ||||| ||||||| Sbjct 17918853 CCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGC 17918794 Query 148127 TGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG 148186 |||||| ||| | | | |||| || || ||| || || | |||||||| Sbjct 17918793 TGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGT 17918734 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAA 148246 ||| || || || ||||| || ||| | || | || || | |||||||||| Sbjct 17918733 TGAAGAGCGTAGGGGAAGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAA 17918674 Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306 | || | | |||||| ||| || || | | || | ||||||||||||||| | Sbjct 17918673 TGGCTGCGTTGATGTCCGTTTTGTGGATCCCAACAGATACTCTCATGAGCATGTGCTGCG 17918614 Query 148307 GTCGTTCGGCAACTTGATTGTTGATCTT 148334 | || ||||| |||| ||||||||| Sbjct 17918613 GACGCTCGGCCACTTTGCCGTTGATCTT 17918586 >seq10 Length=23202889 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| || | | | ||||| || || |||||||||||| | || || | Sbjct 4416068 CGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCA 4416009 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| ||||||| |||| |||||||| || ||||| || ||||| || ||| Sbjct 4416008 TCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTA 4415949 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | |||||||| || | || | Sbjct 4415948 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4415889 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| || ||||| | ||| |||||||| Sbjct 4415888 GTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | || || |||||| ||||| || || | Sbjct 4416275 GACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCG 4416216 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || ||||| || ||||| || || ||| | Sbjct 4416215 AAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCTTTGACA 4416156 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || ||| | |||||||| || | || | || |||||||| || ||||| Sbjct 4416155 TTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTG 4416096 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 4416095 ACGAAGATCTGCATGCCT 4416078 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || |||||| ||||| || |||| Sbjct 4415819 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCG 4415760 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || ||||| || || || || || ||| | Sbjct 4415759 AAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGACA 4415700 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || ||| | |||||||| || | || | || ||||||||||| || || Sbjct 4415699 TTTTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGGGTCTTC 4415640 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 4415639 ACAAAGATCTGCAT 4415626 >seq5 Length=28395245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| ||||| ||||||||||| | ||| || | Sbjct 9220063 CGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 9220122 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| || || |||||||| || Sbjct 9220123 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 9220182 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || |||| || | Sbjct 9220183 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATG 9220242 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||||||||| || || | ||| |||||||| Sbjct 9220243 GTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220277 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| ||||| ||||||||||| | ||| || | Sbjct 9220291 CGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 9220350 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| || || |||||||| || Sbjct 9220351 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 9220410 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || |||| || | Sbjct 9220411 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATG 9220470 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||||||||| || || | ||| |||||||| Sbjct 9220471 GTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220505 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| | ||| || | Sbjct 9215603 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 9215662 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| || || |||||||| || Sbjct 9215663 TCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 9215722 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || |||| || | Sbjct 9215723 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATG 9215782 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||||||||| || || | ||| |||||||| Sbjct 9215783 GTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9215817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| ||||| ||||||||||| | ||| || | Sbjct 9220519 CGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 9220578 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| ||||| || || |||||||| || Sbjct 9220579 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 9220638 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | |||||| | ||||| || |||| || | Sbjct 9220639 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCGACCTCGAGGGTGATG 9220698 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || || || | || ||||||||| Sbjct 9220699 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 9220734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611051059000