Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 423 3e-113 seq23 111 2e-19 seq5 93.3 6e-14 >seq4 Length=27622843 Score = 423 bits (468), Expect = 3e-113 Identities = 1264/1941 (65%), Gaps = 17/1941 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| | ||||||||| | || | || || || ||||| Sbjct 17920084 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 17920025 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || ||||| | ||| || || ||||| || || ||||| || | ||| Sbjct 17920024 ACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 17919965 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 17919964 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17919905 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 17919904 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCCAGTCCAGCAGG 17919845 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || || || || || || | || || Sbjct 17919844 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGAGCCT 17919785 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || |||| || || || || ||||| | || || Sbjct 17919784 TCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 17919725 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || || || | | || || || || || | || ||||| || Sbjct 17919724 TAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAACGGG 17919665 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 || | | || || || || |||||||| ||||| || || || ||||| || || || Sbjct 17919664 TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCTGTGG 17919605 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || | || ||||| || | || || || ||||| || ||||| || || Sbjct 17919604 CGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTTGTTC 17919545 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCA 69249 | ||| ||| | |||||| ||| |||||| ||| ||||| || || Sbjct 17919544 AAGTTTTTGACGATTACTTTGGTCACAAATGCTAGTTTTTTAAAGTCAAAAGTCCGCTCA 17919485 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || | || || |||||||| || |||||||||| Sbjct 17919484 GGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCG 17919425 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | || | | ||| ||||| || || || || | |||||| || |||||||| ||| Sbjct 17919424 CTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGC 17919365 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| |||| |||||||| ||||| || || |||| ||||| ||||| || Sbjct 17919364 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTC 17919305 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 || || |||||||| | | ||| || | ||| || | ||| |||| || || | Sbjct 17919304 TGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTG--ACCCTCC 17919247 Query 69490 --TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 || || |||||| || || ||| ||||| || || ||||| || |||| | Sbjct 17919246 CTTCCTTCTCATATGTGGTGTAAAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCC 17919187 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 |||| || || || |||||||||| ||||| | | || |||| ||||| | Sbjct 17919186 CAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTTCATGA 17919127 Query 69608 ATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | || || || ||||| | || || ||| || ||||||| || | || || ||||| Sbjct 17919126 ACAGGTCTGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCG 17919068 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || || || || || | || || | | ||| | ||||| || || || || || Sbjct 17919067 GTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATG 17919008 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | |||| || | || || |||||||| || | ||| | |||||||| || ||| Sbjct 17919007 GCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAG 17918948 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 ||||||||||| || | | || || || || || || || || | ||||| || || Sbjct 17918947 ACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGCTCCCC 17918888 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | | | || || | | | || ||||| || ||| || ||||| || ||| Sbjct 17918887 GTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGCA 17918828 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | |||| ||||| || || || || ||||| || ||| ||||| || || || Sbjct 17918827 CACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 17918768 Query 69967 CAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||||| |||| || | ||| | |||||||| || || | ||||| || ||||| || Sbjct 17918767 CAGCTGGACAGCTGTGGCCTGT-TGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGGGT 17918709 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || ||||| ||||| || ||||| |||| | || ||| | || Sbjct 17918708 GAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTTTGTG 17918649 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | | || | ||| | ||| ||||| || || || || ||| || || Sbjct 17918648 GATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCGTTGAT 17918589 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||||||||||| || ||||| || || ||||| || |||| || || || || | Sbjct 17918588 CTTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAGGAGAAATCGCG 17918529 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC---CATAAC 70262 ||| | || || | || || || || || | | | ||| || || | | | Sbjct 17918528 GTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGTCTC 17918469 Query 70263 AGTAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATC 70322 | ||||| || ||||| | | ||| || || || |||||| | | || Sbjct 17918468 CTT---GGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGACGTAGTTGTACAGGTC 17918412 Query 70323 TTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCT 70382 ||||| || ||||| || | || || || || ||||| | ||||| | ||| || | Sbjct 17918411 CTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCG 17918352 Query 70383 GGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGC 70442 || || || || || ||||| || || | || || || || || || || || || Sbjct 17918351 TGCAGCGAGGATGGCGTAGTCGGGGTGCTTGGTTGTGAGGGTGGCGGCGATCTCTGCGGC 17918292 Query 70443 TAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGC 70502 | ||| || | || | ||||| || ||| | || | || || || || ||||| | Sbjct 17918291 CAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCGT 17918232 Query 70503 TATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGA 70562 || | | | ||||| | || || | |||||| || || || | || || ||||| Sbjct 17918231 AATCTGGGTCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGAGA 17918172 Query 70563 TGTAATTTTATCAAACATAAC 70583 || |||||||| ||||| || Sbjct 17918171 CGTGATTTTATCGAACATGAC 17918151 >seq23 Length=22362490 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||||| || | || || ||||||||||| || | ||| | Sbjct 14674783 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 14674724 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 |||||||| | |||||||| || || || || |||||||| || || ||||||||||| | Sbjct 14674723 TGAGCCAATAAATGGCAGCGAATGAGCCGGAGAAGAAGATTCCCTCCACTGCTGCAAAAG 14674664 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || ||| || Sbjct 14674663 CCACAATTCGCTCCCC 14674648 >seq5 Length=28395245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || ||||| || ||||||| || |||||||| ||||| || ||||| || Sbjct 12623635 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 12623694 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || | || ||||| || || ||||||| || || || Sbjct 12623695 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTCTCTGTCTGAGACTCAATGAT 12623753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908585341000