Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 181 1e-40 seq5 98.7 1e-15 >seq4 Length=27622843 Score = 181 bits (200), Expect = 1e-40 Identities = 660/1010 (65%), Gaps = 31/1010 (3%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| ||||| || || Sbjct 17920082 CTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCAC 17920023 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | ||| || | ||||||||| | ||||| | ||| | Sbjct 17920022 GATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 17919963 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 17919962 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 17919903 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | || ||| ||||| || || | |||||| | || | Sbjct 17919902 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCCAGTCCAGCAGGT- 17919844 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTG-GGACGCGGGAGAAC 110909 | | || || | ||||||||||| |||| || | |||||| ||| |||| || | Sbjct 17919843 CGGTGGGCGTCTTC-TCCCACATGTCGTACTGGAGGATGCCCTTGCTGAC-CGGG-GAGC 17919787 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | || | || || |||| || | | |||||| || |||||||||||||||| | Sbjct 17919786 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGG 17919727 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| |||||||| || |||| | || || ||| || || | Sbjct 17919726 CGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAACG 17919667 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 |||||| | || || | || || | ||| || || || | || || || |||| Sbjct 17919666 GGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCTGT 17919607 Query 111090 GTCGCATATTAGACT--TTCGC-GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||| | || |||| | ||| ||| | || || || | || | || || | Sbjct 17919606 GGCGCTTGTTGGACTTCTCCGCTTCAGGC---ACTGGGTAGTAGTTAATTTCGATAATCT 17919550 Query 111147 GGTTTAGATTTTTGGTAACAAT--CTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAG 111203 ||| | |||||| || || ||||| ||| ||||||| | | ||||||| Sbjct 17919549 TGTTCAAGTTTTTG---ACGATTACTTTGGTCACAAATGCTAGTTTTTTAAAGTCAAAAG 17919493 Query 111204 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 111263 | || ||| |||| ||| | || ||||| || |||| ||| || || || Sbjct 17919492 TCCG---CTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTA 17919436 Query 111264 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCC 111323 |||||| | |||||||| | |||||||| || | |||| || || || || | Sbjct 17919435 CCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGC 17919376 Query 111324 CCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 111383 ||| ||||| ||||| |||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 17919375 CCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTAC 17919316 Query 111384 CCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCG 111442 | || || ||||| || | || ||| || | ||| || | | | | || || | | Sbjct 17919315 CGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCT-TCACCACGCGC 17919257 Query 111443 TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC- 111501 ||| ||| || ||| ||| || | ||||| || || |||||||| ||| | || Sbjct 17919256 TTGACCCTCCCTTCCTTCTCATATGTGGTGTAAAGCTTCTCGAACTCCTC-CCCCCAGCA 17919198 Query 111502 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCA 111559 ||| || || || || || ||||| | |||||||| | | || ||| Sbjct 17919197 CTCGTCCAGCCCAGGGCACTCGTTCGGACACATCAGAGACCA--GTCTGTGTTGCTCTCC 17919140 Query 111560 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 111609 || | ||||||||| |||||||| ||||||| || | || || ||||| Sbjct 17919139 ACTCTCTTCATGAACAGGTCTGGGATCCACATGGCGTAGAAAAGGTCTCT 17919090 >seq5 Length=28395245 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 111266 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCC 111325 ||||| || ||||||||||| ||| || || || | ||| || || || ||| Sbjct 12623611 TCATCTTTGCTTGTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCC 12623670 Query 111326 AAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 111385 | ||||| ||||| |||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 12623671 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCG 12623730 Query 111386 GTCTCCGTCTGTGA 111399 ||||| ||||| || Sbjct 12623731 GTCTCTGTCTGAGA 12623744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031803740000