Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 170 2e-37 seq5 95.1 1e-14 seq8 84.2 3e-11 >seq4 Length=27622843 Score = 170 bits (188), Expect = 2e-37 Identities = 822/1299 (63%), Gaps = 30/1299 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 17919988 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 17919929 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | | || ||| Sbjct 17919928 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 17919869 Query 118302 TTGAGAGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355 || || | | |||||| || | || || | |||||| |||| || || Sbjct 17919868 TTCAGGACCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 17919815 Query 118356 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACC 118412 |||||||| || | | | || || || || | ||||| || ||||| |||| | Sbjct 17919814 TGGAGGATGCCCTTGCTGACCGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCA 17919755 Query 118413 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCA 118472 |||| ||| |||||||||| ||||| |||| || || || ||||| || || Sbjct 17919754 ---GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 17919698 Query 118473 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCG 118532 |||| || ||||| | || |||| | || | || || | || || Sbjct 17919697 TTCAGCAGCTGAGCCTCAGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCC 17919638 Query 118533 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC 118592 | ||| ||||| |||| || || || | || | | | || |||||| || | Sbjct 17919637 AAACCCTGGACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGC 17919578 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 || || || | || | ||||||| | | || | |||||| || || || || | Sbjct 17919577 ACTGGGTAGTAGTTAATTTCGATAATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACA 17919518 Query 118653 TCATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGC 118711 ||| || |||| | |||||| | || ||| |||| ||| | || || Sbjct 17919517 A-ATGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGAGCGC 17919462 Query 118712 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 118771 ||| || |||||||||||||| | |||||| | |||||||| | ||||| || Sbjct 17919461 GATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGT 17919402 Query 118772 GCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 118831 ||| | ||| || || |||||||||| |||| || || ||| |||| || || Sbjct 17919401 GCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGC 17919342 Query 118832 ATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 || ||||| |||||||| ||||| || || || || ||||||| || ||| || | ||| Sbjct 17919341 GTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCA 17919282 Query 118892 GACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 || | ||| ||| | ||| | | ||| || | ||| || | ||||| || Sbjct 17919281 CACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCTTCCTTCTCATATGTGGTGTAAAG 17919222 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 119011 || ||||| || ||| | ||| ||||| || || | || || | || Sbjct 17919221 CTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGGCACTCGTTCGGACACATCAG 17919162 Query 119012 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 119071 |||||| | ||| || | ||||||||| |||||||||||||| | || | Sbjct 17919161 AGACCAGTCTGTGTTGCTCTCCACTCTCTTCATGAACAGGTCTGGGATCCACATGGCGTA 17919102 Query 119072 GAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130 ||| || || | | | ||| || | | || || || || |||||| |||| Sbjct 17919101 GAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTCAGCTCCAAGAAGT 17919043 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC----CCTTACGACGA 119186 | | | ||| |||||| || |||||||||| || | | | ||| | | Sbjct 17919042 CAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTG- 17918984 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| || || | ||||||| ||| | || | ||||| || | || || Sbjct 17918983 CCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCG 17918924 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | ||| | ||| || || || ||| | | | ||||| | || | Sbjct 17918923 TTGGAGTTGCCGTTGGTGCCGGCGATATAGCTCCCCGTCGATCTGATGCAGCTGACCGCC 17918864 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 | ||||| ||||| ||| |||| ||||| | || |||| | | || || |||| || Sbjct 17918863 ACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATG 17918804 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || ||||| ||| | || | |||| ||||||||||| |||| || |||||| Sbjct 17918803 CCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 17918744 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 || || ||||||||||| || || | |||||| ||||| Sbjct 17918743 GTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGGGTGAAC 17918705 >seq5 Length=28395245 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||||| | |||| ||||| |||| ||| ||||| ||||| Sbjct 12622170 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAA 12622229 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| || ||||| Sbjct 12622230 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 12622261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 |||||||||| ||| |||||||||| || || | | | |||||||||| |||| | Sbjct 12623623 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATT--TGATGGTGCCCAGATTCTGCT 12623680 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||| |||| || || |||||||| |||||||||||||| || ||||| || | Sbjct 12623681 GGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTCTCTGTCT 12623740 Query 118870 GGGACT 118875 | |||| Sbjct 12623741 GAGACT 12623746 >seq8 Length=22893611 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||| || || || |||||| ||| || ||||| || || | ||| | Sbjct 22892198 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTTT 22892139 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| |||||| || || |||||||||||||| |||||||| Sbjct 22892138 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 22892090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435006739000