Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 181 1e-40 seq23 89.7 6e-13 seq8 84.2 3e-11 >seq4 Length=27622843 Score = 181 bits (200), Expect = 1e-40 Identities = 893/1404 (64%), Gaps = 52/1404 (4%) Strand=Plus/Plus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||||| | || || |||||||| || || || || || || ||||||| Sbjct 17918705 GTTCACCCACGCTTCCCCTACGCTCTTCAACGCGGGAACCAACAGGCCACAGCTGTCCAG 17918764 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 |||||||| |||||| || || ||| ||| | || || || | || || | | | Sbjct 17918765 CTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCA 17918824 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATG-----CACATCCATGATGT- 104487 |||||| | ||||| |||| ||| ||||| ||||| || || | ||| | | Sbjct 17918825 GTGTGCCCTCATCTCCAAGTCGGCCGGGGGAATTGGCGTGGCGGTCAGCTGCATCAGATC 17918884 Query 104488 ----GAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTC 104543 | |||| || ||| | || || || || | || | || | | | Sbjct 17918885 GACGGGGAGC---TATATCGCC-------GGCACCAACGGCAACTCCAACGGGCTCGTCC 17918934 Query 104544 CAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAGG 104603 | ||||| | || | ||| ||| |||||||| || | || | || | | | ||| Sbjct 17918935 CCATGCTGAGAGTCTACAACAACACTGCGCGCTACGTCGACCAGGGAGG-CAACAAGAGG 17918993 Query 104604 ----GATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAG 104659 || | | || | || || ||||| |||||| ||| | | || ||| | ||| Sbjct 17918994 CCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCACTTCGATGTGTTTGACTTCTTGGAG 17919053 Query 104660 TTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGG 104719 || ||| || | |||||| | || | | || || |||| ||| | ||| Sbjct 17919054 CTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCATGTGG 17919113 Query 104720 ATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCA---ATTGGTCTCTCTTTTGT 104776 || ||||| || |||||||||||||| |||||| || | |||||||| | ||| Sbjct 17919114 ATCCCAGACCTGTTCATGAAGAGAGT---GGAGAGCAACACAGACTGGTCTCTGATGTGT 17919170 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACAC 104835 || || || ||||| || ||| ||| | ||| |||||||| || |||||||| Sbjct 17919171 CCGAACGAGTGCCCTGGGCTGGACGAGTGCTGGGGG-GAGGAGTTCGAGAAGCTTTACAC 17919229 Query 104836 AAAGTACGAGGAAGAAGGTCGGG-CGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAG 104894 | || ||| | ||||| ||| | | ||| |||| ||| | |||||| | | Sbjct 17919230 CACATATGAGAAGGAAGGGAGGGTCAAGCGCGT-GGTGAAGGCTCAGCAGGTGTGGCACG 17919288 Query 104895 CTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTA 104954 | ||| || |||| || || || || ||||| || |||||||| |||||||||||||| | Sbjct 17919289 CCATTATCGAGTCCCAGACAGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCA 17919348 Query 104955 ACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAA 105014 || ||||| || || ||||| |||| ||||| || ||| ||||| ||||||| Sbjct 17919349 ACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGCAGCAACCTCTGCACAGAAA 17919408 Query 105015 TCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCC 105074 | | || | || | | |||||| || |||||||| || || || ||||| ||| Sbjct 17919409 TAGTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTAATCTGGCCTCCATCGCGCTCA 17919468 Query 105075 CCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGA 105134 || ||| || || ||| ||| ||||| | | ||||||| || || | Sbjct 17919469 ACATGTACGTCACCCCTGAG---CGGACTTTTGACTTTAAAAAACTAGCATTTGTGACCA 17919525 Query 105135 AAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGA 105191 || || ||||||| | |||| |||| || | || | ||||| || ||| Sbjct 17919526 AAGTAATCGTCAAAAACTTGAACAAGATTATCGAAATTAACTACTACCCAGTGCCTGA-- 17919583 Query 105192 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGG 105251 || || || || | | | ||| | || || || |||| || |||||| | || | Sbjct 17919584 -AGCGGAGAAGTCCAACAAGCGCCACAGGCCGATCGGAATCGGCGTCCAGGGTTTGGCAG 17919642 Query 105252 ATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGC 105311 | | ||||| || ||| || | || || | || || || | || | Sbjct 17919643 ACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGCCCTGAGGCTCAGCTGCTGAACATTC 17919702 Query 105312 GCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTG 105371 || ||||||||||| || ||||||| || |||||||| | ||| |||| | | Sbjct 17919703 AAATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCTGCTGAGC 17919762 Query 105372 ATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGA 105429 || || || || || | || || || || | ||| |||||| | || || | || Sbjct 17919763 TCGGCCCCTACGAGACGTACGAAGGCTCCCCGG--TCAGCAAGGGCATCCTCCAGTACGA 17919820 Query 105430 TATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGAAGCTCTCAAGGAACGCATC 105487 ||||||| || || || | | | || | |||||| | | || ||||| ||| Sbjct 17919821 CATGTGGG-AGAAGACGCCCACCGAC-CTGCTGGACTGGAAGGTCCTGAAGGAGAAGATC 17919878 Query 105488 AAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCA 105547 || | || | | ||||| || || |||| || ||||| || ||||||||||| Sbjct 17919879 GCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCC 17919938 Query 105548 CAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 105607 || ||| |||| || || || | | | ||| ||||||| | |||||||| | || Sbjct 17919939 CAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGG 17919998 Query 105608 ACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATT 105667 ||| | ||||||||| ||| || || || || | | ||||| | |||| Sbjct 17919999 GTGCTCTCTGGAGAGTTTCAGATCGTGAATCCTCACCTGCTCAAAGACCTGACGGAGAGA 17920058 Query 105668 GGTCTCTGGTCCAAGGATATGAAG 105691 || || ||| | |||| |||||| Sbjct 17920059 GGACTGTGGAGCGAGGAGATGAAG 17920082 >seq23 Length=22362490 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||| | | || ||||| || ||||| ||||||||||| || || ||| || Sbjct 14674651 GAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATCTTCTTCTCCGGCTCATTCGCTGCC 14674710 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||||||||||||||||| |||| || ||||| || || || |||||||||||| || Sbjct 14674711 ATTTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 14674769 >seq8 Length=22893611 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||||||| || || | ||||| || ||| |||| Sbjct 22892090 GTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCGATCTTCTGGCTGAAAAAGAGAGGC 22892149 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 22892150 CTGATGCCCGGACTGACCTTCTCCAACGAGCTGATCAGCAGAGACGAGG 22892198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260617731000