Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 325 4e-84 seq8 109 6e-19 seq23 105 7e-18 seq5 96.9 4e-15 >seq4 Length=27622843 Score = 325 bits (360), Expect = 4e-84 Identities = 884/1336 (66%), Gaps = 53/1336 (4%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||| | |||| | ||||||||| |||| |||||||||||| || Sbjct 17919989 GTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 17919930 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||| || ||||| || || | ||| || |||| | || ||| | ||||| | Sbjct 17919929 GGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTC 17919870 Query 78654 CTTTAGGCCGTCCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| ||| | | ||| | || | | || || |||||||||| || || Sbjct 17919869 CTTCAGGACCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 17919810 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 ||| |||| | |||| || || | | |||||||||| | || ||| || || Sbjct 17919809 GATGCCCTTGCTGACCGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAG 17919750 Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 ||||| | | |||||| |||| ||| | | ||| ||||| |||| ||| Sbjct 17919749 CTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAG 17919690 Query 78828 GCGCGCCTT-GGTCTCGTCGAACGAAAGGCCGAGCATCA---TGAAGACATCGGCCAGGC 78883 | |||| || || ||||||| || | |||| | ||||| | || |||| | Sbjct 17919689 CTGAGCCTCAGGGCTT-TCGAACG---GGTAGCGCATGAGGATGAAGGCGTCTGCCAAAC 17919634 Query 78884 CCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC- 78942 ||||||||||||| ||||||| | ||||||| ||||| ||| |||| || | | Sbjct 17919633 CCTGGACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCT---CCGCTTCAGGCA 17919577 Query 78943 --GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGA---CCCGAGTCA 78997 ||||| |||| ||||| | ||||| ||| |||||| | |||| Sbjct 17919576 CTGGGTAGTAGTTAATTTCGATAATCTTGTTCAAGTTTT---TGACGATTACTTTGGTCA 17919520 Query 78998 CCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAAAGTCG-----GTAG-GC 79051 | | ||| || |||||| ||| | | | | || || | || Sbjct 17919519 CAAATGCTAGTTTTTTAAAGTCAAAAG----TCCGCTCAGGGGTGACGTACATGTTGAGC 17919464 Query 79052 AC-AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCT 79110 | | || ||||| || ||||| || ||| || ||| | ||| | |||||| Sbjct 17919463 GCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCT 17919404 Query 79111 GTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAG 79170 ||||| | || ||||||||||| | |||| ||||||||||||| ||| ||| Sbjct 17919403 GTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAG 17919344 Query 79171 GCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCC 79230 ||||| ||||| |||||||||||| ||||| || ||| || || || | ||| | Sbjct 17919343 GCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGC 17919284 Query 79231 CAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTG--TGCGACGTACGTCCGGT 79288 || | | | | ||| || || |||| ||| |||| | | | || || || Sbjct 17919283 CACACCTGCTGAGCCTTCACCACGCGCTTG-ACCCTCCCTTCCTTCT-CATATGTGGTGT 17919226 Query 79289 ACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACA 79348 | | || | ||| ||||||| || ||| ||| || |||||||||| ||| |||| Sbjct 17919225 AAAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGGCACTCGTTCGGACACA 17919166 Query 79349 TCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGG 79408 |||| |||||| || |||| || ||| |||||| ||||| |||||||||| || Sbjct 17919165 TCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTTCATGAACAGGTCTGGGATCCACATGG 17919106 Query 79409 CCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAA 79468 | ||| ||||| | | | | |||||| | || |||| |||||| | | Sbjct 17919105 CGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAAGA 17919046 Query 79469 AGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGC 79528 |||| | | ||| |||||| |||||||| || ||||| |||| || | |||| Sbjct 17919045 AGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGT 17918986 Query 79529 CGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGC 79588 ||| ||||||| |||||| || || ||||||||| | |||| |||||||| |||| | Sbjct 17918985 TGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCC 17918926 Query 79589 CGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCC--CGAA-TGTTCGAGC 79645 ||| || | |||||| || ||| ||| || |||| || ||| || | ||| Sbjct 17918925 CGTTGGAGTTGCCGTTGGTGCCGGCGATA----TA--GCTCCCCGTCGATCTGATGCAGC 17918872 Query 79646 AGTGG---ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCT 79702 | | || || ||||||| | ||||||||||| | || |||| ||| ||||| | Sbjct 17918871 TGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGT 17918812 Query 79703 CGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTG 79762 |||| ||||| ||||| |||||| ||||| |||| |||||||||||| |||| ||||| Sbjct 17918811 CGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTG 17918752 Query 79763 GGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCA 79822 | |||| || || ||||||||||| || || | ||||| ||||| |||| | || Sbjct 17918751 GCCTGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGGGTGAACCACTTCTCCGACA 17918692 Query 79823 TCAGATCGTACGTCTC 79838 ||| | ||||||||| Sbjct 17918691 GCAGGTTGTACGTCTC 17918676 Score = 268 bits (296), Expect = 1e-66 Identities = 865/1335 (65%), Gaps = 51/1335 (4%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| ||||| | || || || |||||| Sbjct 17918676 GAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCTTCCCCTACGCTCTTCAAC 17918735 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| |||| ||||| ||||| | || ||||| || |||||| Sbjct 17918736 GCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGC 17918795 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || ||||| ||||| ||||| ||| |||| || | ||||||||||| | ||||||| Sbjct 17918796 ATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGGA 17918855 Query 19346 ATCGG------GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 || || | || |||| ||| | |||| || | ||| || || Sbjct 17918856 ATTGGCGTGGCGGTCAGCTGC------ATCAGATCGACGGGGAGCTATATCGCCGGCACC 17918909 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 ||||| || |||| ||||||| ||||| | |||| ||||||||| || | ||| Sbjct 17918910 AACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACTGCGCGCTAC 17918969 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 ||| ||||||| ||| ||| | || |||| ||||| ||||| ||||| |||||| Sbjct 17918970 GTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCAC 17919029 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 || || | || ||| | || ||| |||| || | |||||| | | Sbjct 17919030 TTCGATGTGTTTGACTTCTTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCC 17919089 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 | ||||| ||| ||| ||||||| || ||||| |||||| ||| || |||| || Sbjct 17919090 AGAGACCTTTTCTACGCCATGTGGATCCCAGACCTGTTCATGAAGAGAGTGGAGAGCAAC 17919149 Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAG 19699 ||| ||| |||||||| ||| |||| |||||||| || ||| || || ||| Sbjct 17919150 ACAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCTGGGCTGGACGAGTGCTGGGGGGAG 17919209 Query 19700 GCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGG 19759 | |||| | || | ||| || || | | || || ||||| ||||| | Sbjct 17919210 GAGTTCGAGAAGCTTTACACCACATATGAGAAGGAAGGGAGGGTCAAGCGCGTGGTGAAG 17919269 Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819 || | | | || ||| || | | || | |||| || ||||| || ||||||||| Sbjct 17919270 GCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGTACGCCGTACATG 17919329 Query 19820 TGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG 19879 ||||| |||||| ||| ||| || ||| |||| | ||| | ||||| Sbjct 17919330 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGC 17919389 Query 19880 TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAAT 19939 |||||| || || ||||| | ||| ||| || ||| || ||||||||| Sbjct 17919390 AGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTAAT 17919449 Query 19940 CTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTTGC 19992 ||||| ||| | || | | ||||| | ||| | || |||||| Sbjct 17919450 CTGGCCTCCATCGCGCTCAACATGTACGTCA----CCCCTGAGCGGACTTTTGACTTTAA 17919505 Query 19993 CAAATTGTACGAGGTGACCCGGG---TCGTCACGCGTAATCTGAATCGCGTCATCGATCG 20049 ||| | |||||| | |||||| || |||| | ||||| Sbjct 17919506 AAAACTAGCATTTGTGACCAAAGTAATCGTCA---AAAACTTGAACAAGATTATCGAAAT 17919562 Query 20050 GAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106 |||| ||||| | | || |||| | ||||| || | ||||||| ||||||||| Sbjct 17919563 TAACTACTACCCAGTGCCTGAAGCGGAG---AAGTCCAACAAGCGCCACAGGCCGATCGG 17919619 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 |||||||||||||| |||| |||| ||||| | | || | | ||||| || Sbjct 17919620 AATCGGCGTCCAGGGTTTGGCAGACGCCTTCATCCTCATGCGCTACCCGTTCGAAAGCCC 17919679 Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGA 20226 |||| | ||| |||| ||||| ||| || | ||| |||| || |||||| Sbjct 17919680 TGAGGCTCAGCTGCTGAACATTCAAATCTTTGAGACCATCTACTACGCCGC---CCTGGA 17919736 Query 20227 ATCG---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGC 20283 || ||||| || || ||| |||||| |||||||||| | | || || |||| Sbjct 17919737 GGCGAGCTGCGAGCTGGCTGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTC-CCCG- 17919794 Query 20284 GTC--CGAGGGTATCCTCCAGCCGGACATGTGG-----GGCG-TCACTGAGAATGAGTTT 20335 ||| | |||| ||||||||| ||||||||| | || ||| || | Sbjct 17919795 GTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGCTGGAC 17919854 Query 20336 TGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCG 20395 |||| | ||| |||| ||||| | ||||| | | ||| |||| | || Sbjct 17919855 TGGAAGGTCCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCC 17919914 Query 20396 CCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTAC 20455 || ||||| || ||||| |||||||||||| |||| ||||||||| | |||| | ||| Sbjct 17919915 CCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTAC 17919974 Query 20456 ACGACCAACATCTAC 20470 || | |||||||||| Sbjct 17919975 ACCAGCAACATCTAC 17919989 >seq8 Length=22893611 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| || ||| ||| || |||||||| |||||| | || Sbjct 22892089 CGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCGATCTTCTGGCTGAAAAAGAGAGG 22892148 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| || |||| ||||||||||||||||| | | ||||||| Sbjct 22892149 CCTGATGCCCGGACTGACCTTCTCCAACGAGCTGATCAGCAGAGACGAGG 22892198 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 22893354 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 22893413 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||||||||| || || Sbjct 22893414 AACTTCTTTGAGAAGCGGGTCGGCGAGTA 22893442 >seq23 Length=22362490 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| ||||| |||||||||||||| ||||| ||| ||| |||| |||||| Sbjct 14674663 GCTTTTGCAGCAGTGGAGGGAATCTTCTTCTCCGGCTCATTCGCTGCCATTTATTGGCTC 14674722 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| ||||| | | |||||||||||||||| | |||| ||| Sbjct 14674723 AAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCAGGGATGAG 14674782 Query 60111 G 60111 | Sbjct 14674783 G 14674783 >seq5 Length=28395245 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || || ||||||| ||| || ||||||||||| | |||| ||||||||||||| | Sbjct 12623635 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 12623694 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||| ||||| |||||||| Sbjct 12623695 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTCTC 12623735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524628586000