Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 190 2e-43 seq8 87.8 2e-12 seq23 82.4 8e-11 >seq4 Length=27622843 Score = 190 bits (210), Expect = 2e-43 Identities = 484/727 (67%), Gaps = 12/727 (2%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||| || | || | |||| || || ||||| | || || || ||||| Sbjct 17918675 TGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCTTCCCCTACGCTCTTCAA 17918734 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || || || ||| |||| |||||||||||| | || ||||| || ||| Sbjct 17918735 CGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAG 17918794 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||| ||||| ||||| ||| ||||||||| ||||||||||| | | || || Sbjct 17918795 CATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGGGG 17918854 Query 53422 TATCGGTAT---CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 || || | | ||| | || | ||| || | ||| || || || Sbjct 17918855 AATTGGCGTGGCGGTCAGCT---GCATCAGATCGACGGGGAGCTATATCGCCGGCACCAA 17918911 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | || | || |||| || ||||| | |||| ||||||||| || || ||||| Sbjct 17918912 CGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACTGCGCGCTACGT 17918971 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 | ||||||| || ||| | || |||| ||||| ||||| ||||| |||||| Sbjct 17918972 CGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCACTT 17919031 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 ||| | | || || | |||||| ||| || | || ||| | | | | Sbjct 17919032 CGATGTGTTTGACTTCTTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGCCAG 17919091 Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 ||||| || ||| || ||||||| || ||||| |||||| | | ||||||| || Sbjct 17919092 AGACCTTTTCTAC-GCCATGTGGATCCCAGACCTGTTCATGAAGAGAGTGGAGAGCAACA 17919150 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAG 53776 || |||| |||||||| |||||||||||||| || || | | ||| || || ||| Sbjct 17919151 CAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCTGGGCTGGACGAGTG-CTGGGGGGAG 17919209 Query 53777 GAGTTTAACGAGATGTATCGGACGTACG-CAGTTCAGGGCCGCTACAAGAAGAAGGTCAA 53835 ||||| | || | || || || | | |||| | | |||| ||| || Sbjct 17919210 GAGTTCGAGAAGCTTTACACCACATATGAGAAGGAAGGGAGGGT-CAAGCGCGTGGTGAA 17919268 Query 53836 GGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACAT 53895 ||| | |||| ||| | || || || || |||| || || || ||||||||||| Sbjct 17919269 GGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGTACGCCGTACAT 17919328 Query 53896 GTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 | ||||| || | |||| ||||||||||||| |||| | ||| ||||||| Sbjct 17919329 GCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAG 17919388 Query 53956 GAGCAAC 53962 |||||| Sbjct 17919389 CAGCAAC 17919395 >seq8 Length=22893611 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 22893442 TACTCGCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 22893383 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 22893382 AAGTCGAAGGGGTTCT 22893367 >seq23 Length=22362490 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| |||||||| ||||| ||| | || ||||| || || Sbjct 3554976 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 3554917 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| || || |||||||||||| || |||||||| || Sbjct 3554916 CCCAGTGGCTGCAGGATGTTCACATTATTACTGCCCACAAAGTTCTGGGCCAAGTTCACT 3554857 Query 117425 ATCGT 117429 || || Sbjct 3554856 ATGGT 3554852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215828995000