Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq10 125 4e-24 seq5 86.0 4e-12 >seq10 Length=23202889 Score = 125 bits (138), Expect = 4e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| ||||| ||| |||||| || ||||| || || || Sbjct 4415852 CCTCCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4415793 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || ||||| || || | |||||| ||||| || || Sbjct 4415792 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4415733 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||| |||||| ||| | | ||| ||||| | |||||| Sbjct 4415732 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 4415673 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| ||| || || ||||| || | || |||||||| |||||||| |||| Sbjct 4415672 TCCAAGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTGA 4415621 >seq5 Length=28395245 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||||| || | |||||| ||| ||||||||| ||||| || || || Sbjct 9220507 CCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 9220566 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || | | ||| || || || || Sbjct 9220567 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 9220626 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || ||| | ||| || || | ||| || Sbjct 9220627 ATGCCTTCCTTGTCCTGGATCTTG-GCCTTCACGTTCTCAATGGTATCGCTGGGCTCGAC 9220685 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||| || || || || || | || || ||||| ||||||||||| Sbjct 9220686 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 9220736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729504105825