Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10 118 9e-22 >seq10 Length=23202889 Score = 118 bits (130), Expect = 9e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||||| || || ||| ||| || || || || || |||| Sbjct 4415852 CCTCCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4415793 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| || || || |||||||||||||| | ||| Sbjct 4415792 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4415733 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || ||||| | | | || ||||| | |||||| Sbjct 4415732 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 4415673 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| ||||| | || || ||||| || || |||||||| |||||||| || Sbjct 4415672 TCCAAGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTGAC 4415620 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||||| || || ||| ||| || || || || || |||| Sbjct 4416308 CCTCCCCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4416249 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| || || || |||||||||||||| | ||| Sbjct 4416248 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGG 4416189 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| || ||| ||| || ||||| | | | || ||||| | |||||| Sbjct 4416188 ATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 4416129 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || ||||| || ||||| ||||| Sbjct 4416128 TCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4416082 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| | || || |||| || || ||| ||| || || || || || || Sbjct 4416084 CATGCCTCCTCTGAGACGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 4416025 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || || ||||| || || || || || |||||||||||||| | Sbjct 4416024 GGAGAGAGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGG 4415965 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| || ||| ||| || || | || | | || ||||| | ||| Sbjct 4415964 GGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTC 4415905 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || || || || ||||| || ||||| ||||| Sbjct 4415904 CACCTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545469122825