Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq9 140 3e-28 seq14 105 5e-18 >seq9 Length=16453912 Score = 140 bits (154), Expect = 3e-28 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | |||||||| || || || ||| Sbjct 11070861 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 11070802 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| ||||| || || || | |||||| ||||| ||||| ||||| ||||| | | Sbjct 11070801 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAC 11070742 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATG 29875 ||||| |||||||||| ||| ||||| || || || |||||| Sbjct 11070741 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATG 11070700 Score = 129 bits (142), Expect = 5e-25 Identities = 127/160 (79%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || ||||||||||||||||||||||| ||||||||||| || || || |||| ||| Sbjct 11069751 AAGTGCCTCCACTGGAACCCGTACACAGGTCCCAGGTCGCCTTCCTCTCTGTCTGTGAAC 11069692 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| ||||| | ||| |||||||| ||||||||||| || || ||| | Sbjct 11069691 CCGAGGTTGTCCAGGAAGTCCCGGGATCCGTTGGCATCCCAGATCTTCACACCTTTCGCC 11069632 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30176 ||||||||||||| ||||| || || ||| || |||||| Sbjct 11069631 GAGAGCTCTTTGGCATTTGTTGATCC-CTG-CG-ACCACA 11069595 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||||||||||| |||||| || ||||| |||||||| || |||| || Sbjct 11070588 CTTTGGGGTTCCAGGCACACATGATGATCCGTCTGTCCTCTGGGTTCTTTTTGATCGTGT 11070529 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | | || |||||||| || || || |||| ||| |||| Sbjct 11070528 CAATGACCTTCTGCAGCTGGTCAACACCTTGTCCCGTGTAATCTG 11070484 >seq14 Length=28398722 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||||||||||||||| | ||| | ||||| ||||||| || ||||| || |||||||| Sbjct 25721086 CTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGCCTGTTCTTCTCTGGGATGGA 25721027 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| ||||| || ||||| |||||||| |||||||| ||| Sbjct 25721026 AAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 25720984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163076247150