Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 398 1e-105 seq23 89.7 7e-13 >seq4 Length=27622843 Score = 398 bits (440), Expect = 1e-105 Identities = 1261/1945 (65%), Gaps = 25/1945 (1%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| | |||||| || | || | || || |||||||| Sbjct 17920084 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 17920025 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 17920024 ACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 17919965 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 17919964 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17919905 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 17919904 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTTCCAGTCCAGCAGG 17919845 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | || ||||| | ||||| || || || || ||||| | || || Sbjct 17919844 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGGGAGCCT 17919785 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | ||| || |||| || ||||| |||||||| | || || Sbjct 17919784 TCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 17919725 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || || || || || || | | || || || || ||| | || || || || Sbjct 17919724 TAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCAGGGCTTTCGAACGGG 17919665 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 || | | || || || || ||||| | ||||| || || || || || || || || Sbjct 17919664 TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCCGATTCCGATCGGCCTGTGG 17919605 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| | || ||||| || | ||||| || ||||| || ||||| || || Sbjct 17919604 CGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTAATTTCGATAATCTTGTTC 17919545 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 | ||| |||| | |||||| ||| |||||| ||| ||||| | | || Sbjct 17919544 AAGTTTTTGACGATTACTTTGGTCACAAATGCTAGTTTTTTAAAGTCAAAAGTCCGCTCA 17919485 Query 76256 A---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | || |||| || || || || || || |||||||| || |||||||||| | Sbjct 17919484 GGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCG 17919425 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 ||| || | | ||| || ||||| || || || | ||||| || || ||||| || Sbjct 17919424 CTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGC 17919365 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 ||||||||||| |||| || | ||| || || || | |||| || || ||||| || Sbjct 17919364 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTC 17919305 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATTATAGATTTG--TATCG 76488 || || |||||||| | | ||| || || || ||| || | | ||| || Sbjct 17919304 TGGGACTCGATAATGGCGTGCCACAC--CTGCTGAGCCTTCACCACGCGCTTGACCCTCC 17919247 Query 76489 CTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAA 76548 |||| || | |||||| || || | | || || || || ||||| || |||| Sbjct 17919246 CTTC-CT-TCTCATATGTGGTGTAAAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAG 17919189 Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCAT 76608 ||||| || || ||||||||||||| ||||| || | || || | ||||| Sbjct 17919188 CCCAGGGCACTCGTTCGGACACATCAGAGACCAGTCTGTGTTGCTCTCCACTCTCTTCAT 17919129 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 || || || || ||||| | || || || |||| || || | || || ||||| Sbjct 17919128 GAACAGGTCTGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCC 17919069 Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728 || ||||| || || || | ||| || | | ||| | ||||| || || || || || Sbjct 17919068 GGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACAT 17919009 Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 || | | || || | || || |||||||| || | || | |||||||| || || Sbjct 17919008 GGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTA 17918949 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 ||||||| ||| || | | ||||| || | || || || || | ||||| || || Sbjct 17918948 GACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATATAGCTCCC 17918889 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 | | || || | | | ||| ||||| || ||| || ||||| || || Sbjct 17918888 CGTCGATCTGATGCAGCTGACCGCCACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGC 17918829 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 ||| | |||| ||||| || ||||| || || || || || ||||| || || || Sbjct 17918828 ACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAA 17918769 Query 76969 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 ||||| |||| || || || ||||| || || || | ||||| || || | Sbjct 17918768 GCAGCTGGACAGCTGTGGCCTGTTG----GTTCCCGCGTTGAAGAGCGTAGGGGAAGCGT 17918713 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 | |||||||| || || || || || ||||| || ||||| |||| | || ||| || Sbjct 17918712 GGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTT 17918653 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 || || || |||| || | ||| | ||| ||||| || || || | || | Sbjct 17918652 TGTGGATCCCAACAGATACTCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCGT 17918593 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204 | || ||||||| ||| || |||| || || || || || |||| || || || | Sbjct 17918592 TGATCTTCAACAGGTAGGACCGCTCCAGGGTCTTGAACCCGAAGAAGTTATAGGAGAAAT 17918533 Query 77205 CTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGA 77264 | | ||| | || || | || || || ||| || | | | ||| || || || Sbjct 17918532 CGCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTC---GA 17918476 Query 77265 CAGT---GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATA 77321 || | || || || ||||| | || ||| || || || ||||| | | Sbjct 17918475 GCGTCTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGACGTAGTTGTACA 17918416 Query 77322 AGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTA 77381 ||| ||||| ||||| || || | || || || || ||||| || || || ||||| | Sbjct 17918415 GGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGA 17918356 Query 77382 TTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTG 77441 | | ||||| || || || ||||| || || | || ||| |||||| || || |||| Sbjct 17918355 TCCGTGCAGCGAGGATGGCGTAGTCGGGGTGCTTGGTTGTGAGGGTGGCGGCGATCTCTG 17918296 Query 77442 CCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 77501 | || | || || | || | || || || ||| | || | || || || || |||| Sbjct 17918295 CGGCCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCA 17918236 Query 77502 TGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATAC 77561 | | || | | | ||||| ||||| || | ||||| || || || | || || | Sbjct 17918235 TCGTAATCTGGGTCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGC 17918176 Query 77562 GAGATGTGATTTTATCAAACATGAC 77586 |||| ||||||||||| |||||||| Sbjct 17918175 GAGACGTGATTTTATCGAACATGAC 17918151 >seq23 Length=22362490 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || ||||| | ||||| || | || || |||||||||||||| | ||| ||| Sbjct 14674781 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 14674722 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||| | || || ||||| || || || ||||| || || || || || || || || Sbjct 14674721 AGCCAATAAATGGCAGCGAATGAGCCGGAGAAGAAGATTCCCTCCACTGCTGCAAAAGCC 14674662 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||| || Sbjct 14674661 ACAATTCGCTCCCC 14674648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934177208000