Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5 109 1e-18 seq10 107 4e-18 >seq5 Length=28395245 Score = 109 bits (120), Expect = 1e-18 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| || || ||||| |||||||||||||| || | | || Sbjct 9220512 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGT 9220571 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||||||| || | | || || Sbjct 9220572 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 9220631 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | | || ||| || || || Sbjct 9220632 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCGACCTCGAG 9220691 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| ||||| ||||| || |||| |||||| || Sbjct 9220692 GGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 9220736 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| || || ||||| |||||||||||||| || | | || Sbjct 9220056 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGT 9220115 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||||||| || | | || || Sbjct 9220116 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 9220175 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| ||| || || || Sbjct 9220176 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAG 9220235 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || ||||| ||||||| |||||| Sbjct 9220236 GGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220277 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| || || ||||| |||||||||||||| || | | || Sbjct 9220284 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGT 9220343 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||||||| || | | || || Sbjct 9220344 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 9220403 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| ||| || || || Sbjct 9220404 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAG 9220463 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || ||||| ||||||| |||||| Sbjct 9220464 GGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220505 Score = 105 bits (116), Expect = 2e-17 Identities = 161/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| || || ||||| || ||||||||||| || | | || Sbjct 9215824 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 9215883 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||||||| || | | || || Sbjct 9215884 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 9215943 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || || |||| | | | || ||| ||| || || Sbjct 9215944 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATC---ACTTGGCTCGACCTC 9216000 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| ||||| ||||| || |||| |||||| || Sbjct 9216001 GAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 9216048 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| || || ||||| || ||||||||||| || | | || Sbjct 9215596 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 9215655 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||||||| || | | || || Sbjct 9215656 GCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 9215715 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| ||| || || || Sbjct 9215716 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAG 9215775 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || ||||| ||||||| |||||| Sbjct 9215776 GGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9215817 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| || ||||||||||| || | | || | |||||| Sbjct 9219610 AGGACAAGATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 9219669 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 9219670 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 9219729 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || || || Sbjct 9219730 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 9219789 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || || ||||| ||||| || |||| ||||||| |||| Sbjct 9219790 TTACCGGTGAGGGTCTTGACAAAGATCTGCATTCCACCC 9219828 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| || || ||||| || ||||||||||| || | | || Sbjct 9219828 CCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 9219887 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||||||| || | | || || Sbjct 9219888 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 9219947 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| ||| || || | Sbjct 9219948 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAA 9220007 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || ||||| || |||| |||||| Sbjct 9220008 GGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 9220049 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| || ||||||||||| || | | || | |||||| Sbjct 9215378 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 9215437 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 9215438 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 9215497 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || | || || || Sbjct 9215498 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAAGGTGATGGTC 9215557 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || |||| |||||| Sbjct 9215558 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 9215589 >seq10 Length=23202889 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || ||||||||||| |||| | ||| Sbjct 4416303 CCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 4416244 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| || | ||||||||| | | ||| || Sbjct 4416243 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 4416184 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || || || ||||||| | || | | |||| ||| || || || Sbjct 4416183 CTCCTTATCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAG 4416124 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| || || ||||||| |||||| Sbjct 4416123 GGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4416082 Score = 105 bits (116), Expect = 2e-17 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || || || || || ||||| || ||||||||||| |||| | || Sbjct 4415846 CTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 4415787 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || ||||||||||| || | ||||||||| | | ||| || Sbjct 4415786 CGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCC 4415727 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAA 152061 ||||| || || || || ||||||| | || | | ||| ||| ||| | || ||| Sbjct 4415726 TCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTC-CACCTCCAA 4415668 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || || || || || |||||||| |||| |||||| || Sbjct 4415667 G-GTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 4415623 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | | ||| || || || || ||||| || ||||||||||| |||| | ||| Sbjct 4416074 CTGAGACGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 4416015 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || ||||||||||| || | ||||||||| | | ||| || Sbjct 4416014 CGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCC 4415955 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || || |||| | | |||| ||| || || || Sbjct 4415954 TCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGG 4415895 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| || || ||||||| |||||| Sbjct 4415894 GTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820430416775