Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10 168 5e-37 seq5 138 8e-28 >seq10 Length=23202889 Score = 168 bits (186), Expect = 5e-37 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | ||| |||||||| || ||| |||||| ||||||||||| || Sbjct 4416084 CATGCCTCCTCTGAGACGCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 4416025 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| ||||| ||||||| ||||||||| |||| Sbjct 4416024 GGAGAGAGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCTGG 4415965 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 4415964 GGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCT 4415906 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || |||||||| || |||||||| ||||| Sbjct 4415905 CCACCTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCAT 4415854 Score = 159 bits (176), Expect = 2e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | | ||||||||| || ||| |||||| ||||||||||| || Sbjct 4415856 CATACCTCCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 4415797 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| ||||| ||||||| ||||||||| |||| Sbjct 4415796 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGG 4415737 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| || | || | ||||||||| || || Sbjct 4415736 GGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTC 4415677 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || ||||||||||| ||||| ||||| Sbjct 4415676 CACCTCCAAGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 4415626 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || ||||| | | ||||||||| || ||| |||||| ||||||||||| |||| Sbjct 4416310 TTCCTCCCCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 4416251 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||| ||| | || ||||||||||| || || ||||||| ||||||||| |||| | Sbjct 4416250 AGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGG 4416191 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | || ||||| ||| ||||| || | || | ||||||||| || |||| Sbjct 4416190 GGATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTTTCAATGGTGTCGCTGGGCTCCA 4416131 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| || || ||||| || |||||||| || |||||||| |||||| Sbjct 4416130 CCTCCAGGGTGATGGTCTTACCAGTGAGGGTTTTGACGAAGATCTGCATG 4416081 >seq5 Length=28395245 Score = 138 bits (152), Expect = 8e-28 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || || || | || || || || || ||| |||||| ||||||||||| || Sbjct 9219819 CATTCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 9219878 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 9219879 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 9219938 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 9219939 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTGGGCT 9219997 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || || ||||| || || |||||||| || ||||| |||||| Sbjct 9219998 CGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 9220050 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || || || || || ||| |||||| ||||||||||| || | | Sbjct 9215363 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 9215422 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| | ||||||||| | || Sbjct 9215423 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 9215482 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| |||| | |||| | ||||||||| || || || Sbjct 9215483 ATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTGGGCTCAAC 9215541 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || ||||| || || |||||||| || ||||| |||||| Sbjct 9215542 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 9215590 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| |||||||||||||||||| || Sbjct 9220047 CATGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTC 9220106 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 9220107 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 9220166 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 9220167 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTGGGCT 9220225 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || |||||||| |||||||| ||||| Sbjct 9220226 CGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220277 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| |||||||||||||||||| || Sbjct 9220275 CATACCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTC 9220334 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 9220335 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 9220394 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 9220395 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTGGGCT 9220453 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || |||||||| |||||||| ||||| Sbjct 9220454 CGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9220505 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| |||||||||||||||||| || Sbjct 9220503 CATACCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTC 9220562 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 9220563 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 9220622 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||| ||| || | Sbjct 9220623 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTATCGCTGGGCT 9220681 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || ||||||||||| || ||||| |||||| Sbjct 9220682 CGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 9220734 Score = 132 bits (146), Expect = 3e-26 Identities = 176/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 44100 TTTATTTCATTCCCC--CTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGAT 44157 || |||||| | ||| | ||||| | || || || || || || |||||| ||||| Sbjct 9219582 TTGATTTCACTGCCCACCCCTCAGACGCAGGACAAGATGGAGGGTTGACTCCTTCTGGAT 9219641 Query 44158 GTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTG 44217 |||||| || | ||| ||| | || ||||||||||| || |||||||||| | ||| Sbjct 9219642 GTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 9219701 Query 44218 CTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGT 44276 |||||| | || | |||||||| ||| ||||| |||| | |||| | ||||||| Sbjct 9219702 CTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGT 9219760 Query 44277 CGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 || || || ||||| | || || ||||| || ||||||||||| || ||||| |||| Sbjct 9219761 CGCTGGGCTCGACCTCGAGGGTGATGGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCA 9219820 Query 44337 T 44337 | Sbjct 9219821 T 9219821 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| |||||| ||||||||||| || Sbjct 9215587 CATGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 9215646 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || || |||||||| || |||||||||| | ||||||||| | Sbjct 9215647 AGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 9215706 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 9215707 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTGGGCT 9215765 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || |||||||| |||||||| ||||| Sbjct 9215766 CGACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTAACGAAGATCTGCAT 9215817 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| |||||| ||||||||||| || Sbjct 9215815 CATACCACCCCTGAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 9215874 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 9215875 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 9215934 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||| || | | Sbjct 9215935 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTATCACTTGGCT 9215993 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || ||||||||||| || ||||| |||||| Sbjct 9215994 CGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 9216046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990290315425