Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10 163 7e-35 seq5 134 3e-26 >seq10 Length=23202889 Score = 163 bits (180), Expect = 7e-35 Identities = 170/221 (77%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| ||||| || || || |||||||| |||||||| || ||| Sbjct 4415857 CAGATCTTCGTCAAAACCCTCACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 4415914 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || || || ||||| || ||||||| Sbjct 4415915 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGC 4415974 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||||| |||||||| | ||||| |||| || ||| Sbjct 4415975 AGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACTCTCTCCGACTACAACA 4416034 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || || || || ||| | |||||| Sbjct 4416035 TCCAGAAGGAGTCCACCCTCCACCTGGTCTTGCGTCTCAGA 4416075 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||| | |||||||| || ||| Sbjct 4415629 CAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCTTGGAGGTGGA--GCCCAGCG 4415686 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || |||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 4415687 ACACCATTGAAAATGTCAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGC 4415746 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 4415747 AGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 4415806 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 4415807 TCCAGAAGGAGTCCACCCTCCACCTGGT 4415834 >seq5 Length=28395245 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || || || || || || || |||||||||||||| | ||| || | Sbjct 9220274 CAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCG--AGCCCAGCG 9220217 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 9220216 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 9220157 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9220156 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 9220097 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||| || || || || |||||||| || | ||||| Sbjct 9220096 TCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 9220057 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || || || || || || || |||||||||||||| | ||| || | Sbjct 9220502 CAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCG--AGCCCAGCG 9220445 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 9220444 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 9220385 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9220384 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 9220325 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||| || || || || |||||||| || | ||||| Sbjct 9220324 TCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 9220285 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || || || || || || || |||||||||||||| | ||| || | Sbjct 9215814 CAGATCTTCGTTAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTCG--AGCCCAGCG 9215757 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 9215756 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 9215697 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9215696 AGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAACA 9215637 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || |||||||| || | ||||| Sbjct 9215636 TCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 9215597 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || || || || ||||| || || || |||||||||||||| | ||| || | Sbjct 9219818 CAGATCTTTGTCAAGACCCTCACCGGTAAGACCATCACCCTCGAGGTCG--AGCCCAGCG 9219761 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 9219760 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 9219701 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9219700 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 9219641 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || ||||| || |||||||| Sbjct 9219640 TCCAGAAGGAGTCAACCCTCCATCTTGT 9219613 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || || || || ||||| || || || |||||||||||||| | ||| || | Sbjct 9220730 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGCG 9220673 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 9220672 ATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 9220613 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9220612 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 9220553 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||| || || || || |||||||| || | ||||| Sbjct 9220552 TCCAAAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 9220513 Score = 122 bits (134), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || || || || ||||| || || || |||||||||||||| | ||| | | Sbjct 9216042 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCG--AGCCAAGTG 9215985 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || ||||| |||||||| ||||| || || || || |||| Sbjct 9215984 ATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 9215925 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 9215924 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 9215865 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || |||||||| || | ||||| Sbjct 9215864 TCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTCAG 9215825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730814429850