Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 156 4e-33 seq14 150 2e-31 seq18 95.1 1e-14 >seq7 Length=46052510 Score = 156 bits (172), Expect = 4e-33 Identities = 172/228 (75%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | | Sbjct 22020290 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020349 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||||||| | |||||| Sbjct 22020350 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 22020409 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 22020410 CAGCGTCTGATCTTTGC-GGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAAC 22020468 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| || || || ||| | || | ||||||||| Sbjct 22020469 ATCCAGAAAGAGTCCACCCTTCACCTGGTGCTCCGACTCAGGGGCGGC 22020516 Score = 150 bits (166), Expect = 2e-31 Identities = 174/233 (75%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | Sbjct 22020057 AAAGATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCC 22020116 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCG-ACAAAGAGGGCATCCCCGCGG 40804 | ||||| | | | | | |||| || || | | |||| |||||||| ||| | | Sbjct 22020117 AAGCGACACCATTGAGAATGTGAAGGCCAAGATGCCAGGACAAGGAGGGCATTCCCCCAG 22020176 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || || |||| || ||||| |||||||| || | |||||||| ||||| Sbjct 22020177 ACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACT 22020236 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| || |||| || ||||| ||| | || | ||||||||| Sbjct 22020237 ACAACATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGACTCAGGGGCGGC 22020289 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| | | | ||||| ||||| ||||||||| |||| ||||| | | | Sbjct 22020745 ATGCAGATCTTCGTGAGACC-CTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020803 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC-CA 40808 |||| | | | | | |||| || || | ||||| |||||||||||| | ||| || Sbjct 22020804 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACGCA 22020863 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 22020864 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAA 22020923 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || ||||| ||| | || | ||||||||| Sbjct 22020924 CATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGACTCAGGGGCGGC 22020972 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | | Sbjct 22020517 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020576 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA-CCA 40808 |||| | | | | | |||| || || | ||||| |||||||||||| | || ||| Sbjct 22020577 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCCA 22020636 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | |||||| ||||||||| Sbjct 22020637 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTCTTCCGACTACAA 22020696 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || ||||| ||| | || | ||||||||| Sbjct 22020697 CATCCAGAAAGAATCCACCCT-CATCTGGTGCTCCGACTCAGGGGCGGC 22020744 Score = 113 bits (124), Expect = 5e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| |||| | |||||||| |||| ||||| | | | Sbjct 22020973 ATGCAGATCTTCGTGAAGACCCTCACAGGCAGA-CCATCACCCTCGAGGTCGAGCCAAGC 22021031 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT-CCCCGCGGACCA 40808 |||| | | | | | |||| || || | ||||| |||||||| |||| | ||| | Sbjct 22021032 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCAGAC-A 22021090 Query 40809 GCAACGACTCATCTACG-CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| || || |||| | | ||||| |||||| | | |||||||| |||||||| Sbjct 22021091 GCAGCGTCTGATCTTTGGCCGGCAAGCAGCTGAAGATGGCCCGCACCCTTTCCGACTACA 22021150 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||| || |||| || ||||| ||| | || | ||||| ||| Sbjct 22021151 ACATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGACTCAGGGGTGGC 22021200 >seq14 Length=34043612 Score = 150 bits (166), Expect = 2e-31 Identities = 172/229 (75%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || ||||| || || || ||||| ||||||||| | || || || || Sbjct 21659975 AAGATGCAGATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCC 21660034 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | ||||| |||| | | ||||| |||||||||||| | ||| Sbjct 21660035 AGTGACACCATCGAGAATGTCAAGCAAAA--TCCAGGACAAGGAGGGCATCCCCCCAGAC 21660092 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||||||| ||||||| Sbjct 21660093 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTAC 21660152 Query 40867 AACATCCAGAAGGAG-GCCACGCTGCATCTAGTGTTGCGCTTGAGGGGC 40914 ||||||||||||||| |||| || || || ||| | || ||||| || Sbjct 21660153 AACATCCAGAAGGAGTCCCACCCTTCACCTGGTGCTCCGTCTGAGGAGC 21660201 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || | || ||| Sbjct 21660657 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTGGAGGGTGAGCCCAGT 21660716 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||| |||||||||||| | |||||| Sbjct 21660717 GACACCATCGAGAATGTCAAGGCAAAGATCCA-GACAAGGAGGGCATCCCCCCAGACCAG 21660775 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC-AA 40868 || || || |||| ||| ||||| |||||||| || | ||||||||| ||||||| || Sbjct 21660776 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAA 21660835 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| | || ||||||| ||| Sbjct 21660836 CATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCTGAGGGGAGGC 21660884 Score = 141 bits (156), Expect = 1e-28 Identities = 171/229 (75%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 21660430 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCT-GAGGTTGAGCCCAGT 21660488 Query 40750 GACAGCGTGCAAACGCTCAA-GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||| || || || | ||||| |||||||||||| | ||||| Sbjct 21660489 GACACCATCGAGAATGTCAAAGGCCAAGATCCAGGACAAGGAGGGCATCCCC-CAGACCA 21660547 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 21660548 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAA 21660607 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| | || ||||||| ||| Sbjct 21660608 CATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCTGAGGGGAGGC 21660656 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 21660202 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCT-GAGGTTGAGCCCAGT 21660260 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| | ||||||||| | |||||| Sbjct 21660261 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGGAGGCATCCCCCCAGACCAG 21660320 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGAC-GACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| |||||||||||||| || | ||||||||| ||||||||| Sbjct 21660321 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAAGATGGTCGCACCCTCTCCGACTACAA 21660380 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| | || ||||||| ||| Sbjct 21660381 CATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCTGAGGGGAGGC 21660429 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || ||| Sbjct 21660885 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGT 21660944 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC-- 40807 |||| | | | | | || ||| | | | | ||||| | ||||||||| | |||| Sbjct 21660945 GACACCATTGAGAAGTTCCAGGCAGA--TCCAGGACAAGGGAGGCATCCCC-CAGACCCA 21661001 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGG-ACGACGAGCGCACCCTCAACGACTAC 40866 |||| || || |||| ||| | |||||| || | || | ||||||||| ||||||| Sbjct 21661002 AGCAGCGTCTGATCTTCGCCGC--AACAGCGGGGAAGATGGTCGCACCCTCTCCGACTAC 21661059 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||||| |||| || || || ||| Sbjct 21661060 AACATCCAGAAGGAGTCCACCCTTCACCTGGTG 21661092 >seq18 Length=26030928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/123 (79%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGAC--ACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCA 116742 |||| || |||||||| ||| || ||| |||||||| |||||| || | |||||| | Sbjct 19432676 AGGTCGATCTGTCCAAAGACGTAC-AGC-ACTGGGAGTCCTTGAAGGATGAGGAGCGCTA 19432619 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| ||||||||||| |||||||| || || || ||||| ||||| ||||| || Sbjct 19432618 CTTCATCTCTCACGTGCTGGCATTTTTCGCTGCTAGTGATGGCATTGTCAATGAGAACCT 19432559 Query 116803 GGT 116805 ||| Sbjct 19432558 GGT 19432556 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||| || || || || || ||||||||||| | |||| || || |||| |||||| Sbjct 19432850 GAGAATCCACGGCGCTTTGTCATTTTCCCCATCAAGTACCATGATATATGGCAGATGTAC 19432791 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||||||| ||||| |||||||| | |||||||| Sbjct 19432790 AAGAAGGCCGAAGCGTCCTTCTGGACGGCTGAGGAGGT 19432753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212637395440