Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq14 116 4e-21 seq24 100 3e-16 seq11 96.9 4e-15 seq7 91.5 2e-13 seq3 89.7 6e-13 >seq14 Length=34043612 Score = 116 bits (128), Expect = 4e-21 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 21660167 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCGAA 21660108 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| || ||||| |||| | Sbjct 21660107 GATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGA--TTTTGCTTGACATT 21660050 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | || || || | |||||||| ||||| || || |||||||| Sbjct 21660049 CTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTAC 21659990 Query 43172 AAAGATTTGCATTTTTAC 43189 |||||| ||||| || || Sbjct 21659989 AAAGATCTGCATCTTGAC 21659972 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | ||||| || | ||| |||||| || || ||||| || | Sbjct 21660655 CCTCCCCTCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 21660596 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || ||||| || || ||||||||||| | || Sbjct 21660595 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTG-GGGG 21660537 Query 43077 ACGCTCTCCTTGTCCATGAT-TTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || ||||| || | | ||||| || | || || Sbjct 21660536 ATGCCCTCCTTGTCCTGGATCTTGGCCTTTGACATTCTCGATGGTGTCACTGGGCTCAAC 21660477 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 21660476 CTC-AGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660430 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT-GTAATCAGC 43015 ||||| || | ||| | ||||| || | ||| |||||| || || || ||| || | Sbjct 21660883 CCTCCCCTCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTTGTAGTCGGA 21660824 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| || ||||| || || ||||||||||| | || Sbjct 21660823 GAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 21660764 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| | ||| ||| |||| || | | ||||| || | || | Sbjct 21660763 GATGCCCTCCTTGT-CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCACC 21660705 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 21660704 CTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660657 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | ||||| || | ||| |||||| || || ||||| || | Sbjct 21660428 CCTCCCCTCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 21660369 Query 43017 AGAGTCCGCTCGTCAT-CTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || | | ||||| || || ||||| || || ||||||||||| | || Sbjct 21660368 AGGGTGCGACCATCTTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 21660309 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| ||| || |||| || | | ||||| || | || || Sbjct 21660308 GATGCCTCCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAAC 21660249 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 21660248 CTC-AGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660202 >seq24 Length=22381654 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 7430543 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 7430484 Query 60125 ATACTACCGAGGATTGAATA 60144 |||||| |||||| |||||| Sbjct 7430483 ATACTAACGAGGACTGAATA 7430464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 7433111 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7433052 Query 60126 TACTACCGAGGATTGAATA 60144 ||||| |||||| |||||| Sbjct 7433051 TACTAACGAGGACTGAATA 7433033 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/91 (85%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 60056 GAAAAAT---TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||||||| || |||| || | |||||| |||||| ||||||||||||||||||||| Sbjct 7459742 GAAAAATACATTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 7459801 Query 60113 ATACTCACCACTATACTACCGAGGA-TTGAA 60142 ||||| |||||||||||| |||||| ||||| Sbjct 7459802 ATACTGACCACTATACTAACGAGGACTTGAA 7459832 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 7461900 TTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 7461959 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 7461960 CTATACTAACGAGGA 7461974 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 7424814 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7424755 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7424754 TACTAACGAGGA 7424743 >seq11 Length=44859740 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 43472689 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 43472630 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 43472629 ATACTAACGAGGA 43472617 >seq7 Length=46052510 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| || || || || ||||| || | || || || | || || Sbjct 22020271 CACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTC 22020212 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || || ||||||||||| | || | || |||||||||| Sbjct 22020211 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 22020152 Query 43094 G-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | || || || | || | | |||||||| | || || |||| |||||||| | Sbjct 22020151 GCATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCT 22020092 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||| || || ||||| || ||||| ||||| ||| Sbjct 22020091 TGCCTGTGAGGGTCTTCACGAAGATCTGCATCTTT 22020057 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| ||| || || || ||||| || | || || || | || || Sbjct 22020498 CACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTC 22020439 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || || ||||||||||| | || | || |||||||||| Sbjct 22020438 CAGCTGCTTGCC-GCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 22020380 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||||| | || || |||| |||||||| || Sbjct 22020379 GATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTT 22020320 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || ||||| ||||| Sbjct 22020319 GCCTGTGAGGGTCTTCACGAAGATCTGCAT 22020290 >seq3 Length=29826154 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6454200 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 6454259 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 6454260 TACTAACGAGGA 6454271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810316473320