Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7 122 8e-23 seq14 114 1e-20 >seq7 Length=46052510 Score = 122 bits (134), Expect = 8e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| || |||||||| || |||||| |||| || || || Sbjct 22020057 AAAGATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCC 22020116 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC-GGACAAGGAAGGCGTGCCGCCCG 31307 ||||| | || | || || | || | ||||||||| ||| | || || | Sbjct 22020117 AAGCGACACCATTGAGAATGTGAAGGCCAAGATGCCAGGACAAGGAGGGCATTCCCCCAG 22020176 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| || || || ||||| ||| ||||||| || | ||| | Sbjct 22020177 ACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACT 22020236 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || |||||||| || ||||||||||| || |||| |||||||| Sbjct 22020237 ACAACATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGACTCAGGGGCGG 22020288 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || |||||||| || |||||| |||| || || || Sbjct 22020289 CATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAG 22020348 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || ||||||||| ||| | || || ||||| Sbjct 22020349 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 22020408 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||| ||| ||||||| || | ||| || || Sbjct 22020409 GCAGCGTCTGATCTTTGC-GGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAA 22020467 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || || ||||| ||||| || |||| |||||||| Sbjct 22020468 CATCCAGAAAGAGTCCACCCTTCACCTGGTGCTCCGACTCAGGGGCGG 22020515 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| || | | |||||||||||||| || ||||| || || || ||||||| || Sbjct 17698939 CACCTCATCATGGCTGGTGTACTCTACAATCTCAGTACAGAGGTTACTGGACTTTATGGT 17698880 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||||||||| || | |||||| | |||||| || |||||||| || || Sbjct 17698879 GCCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCATCCTTATAAAGCATGTAAGGGGT 17698820 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || ||||| ||| ||||| || || || |||||| Sbjct 17698819 TCCGGTCTCAGTCTGGGACTCAATAATGGCGTGCCACA 17698782 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| | ||| || |||||||| || |||||| |||| || || || Sbjct 22020744 CATGCAGATCTTCGTGA-GACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAG 22020802 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC-C 31310 ||||| | || | || || | || ||||||||| ||| | || || ||| | Sbjct 22020803 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACGC 22020862 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || ||||| ||| ||||||| || | ||| || | Sbjct 22020863 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACA 22020922 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || |||||||| || ||||||||||| || |||| |||||||| Sbjct 22020923 ACATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGACTCAGGGGCGG 22020971 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || || || || ||||| ||||| |||||||| || | ||| | ||||| || Sbjct 17697386 CATGAAGAGGTCAGGGATCCACAGAGCATAGAACAGATCTCTGGCCCTTTGTTCCTCCTT 17697327 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||||||||||| |||| ||||| ||||| |||||||| ||||||||||| | ||| Sbjct 17697326 CCCGGTGTTCTTCTTCAGATCCAGGAAGTCAAACACGTCAAAGTGCCACGGCTCCAAGTA 17697267 Query 23473 AACGGCAAACGCGCCCGGTCTCT 23495 | |||||||| || ||||||| Sbjct 17697266 CATAGCAAACGCACCAGGTCTCT 17697244 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || |||||||| || |||||| |||| || || || Sbjct 22020516 CATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAG 22020575 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC- 31310 ||||| | || | || || | || ||||||||| ||| | || || |||| Sbjct 22020576 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCC 22020635 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || || ||||| ||| ||||||| || ||| || | Sbjct 22020636 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTCTTCCGACTACA 22020695 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || |||||||| || | ||||||||| || |||| |||||||| Sbjct 22020696 ACATCCAGAAAGAATCCAC-CCTCATCTGGTGCTCCGACTCAGGGGCGG 22020743 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || ||||||| | | |||||| |||| || || || Sbjct 22020972 CATGCAGATCTTCGTGAAGACCCTCACAGGCAGACC-ATCACCCTCGAGGTCGAGCCAAG 22021030 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || ||||||||| ||| | || ||| || Sbjct 22021031 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCAGACA 22021090 Query 31312 GCAGCGTCTAATATTCG-CTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||||||| || || | | ||||| ||| || |||| | || | ||| || Sbjct 22021091 GCAGCGTCTGATCTTTGGCCGGCAAGCAGCTG-AAGATGGCCCGCACCCTTTCCGACTAC 22021149 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||||| || ||||||||||| || |||| ||||| || Sbjct 22021150 AACATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGACTCAGGGGTGG 22021199 >seq14 Length=34043612 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || |||||||| ||||| ||||| || |||||| | || ||||| || Sbjct 21659975 AAGATGCAGATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCC 21660034 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| || | || ||||||||| ||| | || || ||| Sbjct 21660035 AGTGACACCATCGAGAATGTCAAGCAAA--ATCCAGGACAAGGAGGGCATCCCCCCAGAC 21660092 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| ||||||| | || | ||| || Sbjct 21660093 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTAC 21660152 Query 31370 AACATTCAAAAAGAAT-CGACTCTTCATCTGGTACTTAGACTGAGGGGC 31417 ||||| || || || | | || ||||| ||||| || | |||||| || Sbjct 21660153 AACATCCAGAAGGAGTCCCACCCTTCACCTGGTGCTCCGTCTGAGGAGC 21660201 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| || || || |||||| | || ||||| || Sbjct 21660201 CATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCT-GAGGTTGAGCCCAG 21660259 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || |||||||| |||| | || || ||||| Sbjct 21660260 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGGAGGCATCCCCCCAGACCA 21660319 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGG-AAGACTCTATGACTATGAGCGATTATA 31370 ||||||||| || ||||| ||||||||| ||| |||| | || | ||| || | Sbjct 21660320 GCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAAGATGGTCGCACCCTCTCCGACTACA 21660379 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || || || || ||||| ||||| || | |||||||| || Sbjct 21660380 ACATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCTGAGGGGAGG 21660428 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| || || || |||||| | || ||||| || Sbjct 21660429 CATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCT-GAGGTTGAGCCCAG 21660487 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | |||||| | || | | ||||||||| ||| | || || ||| Sbjct 21660488 TGACACCATCGAGAATGTCAAAG-GCCAAGATCCAGGACAAGGAGGGCATCCC-CCAGAC 21660545 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| ||||||| | || | ||| || Sbjct 21660546 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTAC 21660605 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || ||||| ||||| || | |||||||| || Sbjct 21660606 AACATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCTGAGGGGAGG 21660655 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| || || || |||||| | || | ||| || Sbjct 21660656 CATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTGGAGGGTGAGCCCAG 21660715 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | ||||| || ||| | |||||||| ||| | || || |||| Sbjct 21660716 TGACACCATCGAGAATGTCAAGGCAAAGATC--CAGACAAGGAGGGCATCCCCCCAGACC 21660773 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA-T 31369 |||||||||| || ||||| ||||| ||| ||||||| | || | ||| || Sbjct 21660774 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACA 21660833 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || ||||| ||||| || | |||||||| || Sbjct 21660834 AACATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCTGAGGGGAGG 21660883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760722050480