Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 1e-12 seq14 82.4 6e-11 >seq7 Length=46052510 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| ||||| || |||||||| ||| || | | | ||||| | || Sbjct 22020265 ATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCTTCCAGCTG 22020206 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-CACAAATTT 15278 ||||| || | |||| ||| || ||||| ||||| || || |||| | || | Sbjct 22020205 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGCATCT 22020146 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 || ||| ||| | || ||||| ||||| || || || | ||| ||||| || |||| Sbjct 22020145 TGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTG 22020086 Query 15339 TCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAATACTT 15388 | || || || || || || ||||| ||| || | ||| | || || || Sbjct 22020085 TGAGGGTCTTCACGAAGATCTGCATCTTTTAACCTGAAAATATACTAATT 22020036 >seq14 Length=34043612 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC-TTCTAATTG 15219 ||||||||||| || || || |||||||| ||| || | | | || ||| | || Sbjct 21660404 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTTCCAGCTG 21660345 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| ||| | |||| ||| || ||||| || || ||| | ||||| || || Sbjct 21660344 TTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCTCCCTTGTCCTGGATCTT 21660285 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||| ||||| ||||| || Sbjct 21660284 GGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTC-AGGGTGATGGTCTTACCAGT 21660226 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| || ||||| Sbjct 21660225 CAGGGTCTTCACAAAGATCTGCAT 21660202 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||| ||| || | | | ||||| | || Sbjct 21660631 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGC 21660572 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| || ||||| | || || || || ||||| || ||| Sbjct 21660571 TTGCCGGCGAAGATCAGACGCTGCTGGTC-TGGGGGATGCCCTCCTTGTCCTGGATCTTG 21660513 Query 15281 CTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||| ||| | || ||||| || || || || || | ||| ||||| ||||| || Sbjct 21660512 GCCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTC-AGGGTGATGGTCTTACCAGT 21660454 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| || ||||| Sbjct 21660453 CAGGGTCTTCACAAAGATCTGCAT 21660430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362174702073879