Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 seq14 116 9e-21 seq3 98.7 2e-15 seq18 86.0 1e-11 >seq7 Length=46052510 Score = 122 bits (134), Expect = 2e-22 Identities = 168/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || ||||| Sbjct 22020291 ATGCCGCCCCTGAGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCG 22020232 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || || | ||| || || || Sbjct 22020231 GAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGG 22020172 Query 104450 GGTATTCCTTCTTTATCCT-GAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || || |||| | ||||| || || ||||| || | ||| ||||| || || Sbjct 22020171 GGAATGCCCTCCTTGTCCTGGCATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTC 22020112 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || || || || |||||||| || Sbjct 22020111 GACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATCTT 22020058 Score = 113 bits (124), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || ||||| Sbjct 22020974 ATGCCGCCCCTGAGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCG 22020915 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG-ATCAGG 104448 || || || | || ||||| || || || || ||||| || || | ||| || || || Sbjct 22020914 GAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGCGTCTGG 22020855 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || || ||||| ||||| || || ||||| || | ||| ||||| || || Sbjct 22020854 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTC 22020795 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || | | | || || |||||||| Sbjct 22020794 GACCTCGAGGGTGATGGTCTTGCCTGTGAG-GGTCTCACGAAGATCTGCAT 22020745 Score = 111 bits (122), Expect = 4e-19 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || ||||| Sbjct 22020746 ATGCCGCCCCTGAGTCGGAGCACCAGATG-AGGGTGGATTCTTTCTGGATGTTGTAGTCG 22020688 Query 104390 GATAGA-GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTG-TTGATCAG 104447 || ||| || | || ||||| || || || || ||||| || || | ||| | | || | Sbjct 22020687 GA-AGAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGGTCTG 22020629 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || || || || || ||||| ||||| || || ||||| || | ||| ||||| || | Sbjct 22020628 GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCT 22020569 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || || ||||| || || || || || || || |||||||| Sbjct 22020568 CGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 22020517 Score = 93.3 bits (102), Expect = 1e-13 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || ||||| Sbjct 22021202 ATGCCACCCCTGAGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCG 22021143 Query 104390 GATAGAGTTC-TACCGTCTTCTAGTTGTTTTCCAG-CAAAAATTAGCCTCTGTTGATCAG 104447 || || || | || ||||| || || || || | |||| || || | ||| || | Sbjct 22021142 GAAAGGGTGCGGGCCATCTTC-AGCTGCTTGCCGGCCAAAGATCAGACGCTGCTGTCTGG 22021084 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || || || || || ||||| ||||| || || ||||| || | ||| ||||| || | Sbjct 22021083 GGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCT 22021024 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || || ||| | || || || || || || || |||||||| Sbjct 22021023 CGACCTCGAGGGTGATGGTC-TGCCTGTGAGGGTCTTCACGAAGATCTGCAT 22020973 >seq14 Length=34043612 Score = 116 bits (128), Expect = 9e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 21660431 ATGCCTCCCCTCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 21660372 Query 104390 GATAGAGTTCTACCGTCTT-CTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 || || || | ||| |||| | || ||||| || || || || || | ||| || || || Sbjct 21660371 GAGAGGGTGCGACCATCTTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCTGG 21660312 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||| | || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 21660311 GGGGATGCCTCCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 21660252 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 21660251 AACCTC-AGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660202 Score = 113 bits (124), Expect = 1e-19 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 21660658 ATGCCTCCCCTCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 21660599 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || || || || || || | ||| || || || Sbjct 21660598 GAGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGG 21660539 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || || ||||| ||||| || ||| ||||| || | ||| || || || || Sbjct 21660538 GG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTTGACATTCTCGATGGTGTCACTGGGCTC 21660480 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 21660479 AACCTC-AGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660430 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA-TAGTC 104388 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 21660886 ATGCCTCCCCTCAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTTGTAGTC 21660827 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 || || || | ||| ||||| || || || || || || || || | ||| || || || Sbjct 21660826 GGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGG 21660767 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || || || || |||||||| || ||||| || | ||| || || || || Sbjct 21660766 GGGGATGCCCTCCTTGTC-TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTC 21660708 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 21660707 ACCCTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660657 >seq3 Length=29826154 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||||||||| |||||||| ||||| ||||| || | || || || ||||| ||||| Sbjct 7134719 CCTTCTTTATCTTGAATCTTGGCTTTCACATTCTCGATAGTGTCACTGGGTTCCACCTCA 7134660 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || |||||||| | ||||| ||||| |||||||| || Sbjct 7134659 AGTGTGATGGTTTTACCAGTCAAGGTTTTCACAAAGATCTGCATCTT 7134613 >seq18 Length=26030928 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 ||| ||||| ||| | ||||||| ||||| || || || |||||||| || || || || Sbjct 19432392 TCAGGAGGTCCAGGTGACTGAAGCGAGATGCTTCTATGGCTTCCAGATTGCAATGGAGAA 19432333 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||| ||||||||||||||||| || | || ||||| || || Sbjct 19432332 TATCCATTCAGAGATGTACAGCCTGCTCATTGATACCTACAT 19432291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151383367414452