Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq8 123 4e-23 seq13 107 3e-18 seq3 102 1e-16 >seq8 Length=32939842 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || |||| ||||| |||| |||||||| || || ||| ||| || || || | Sbjct 30958143 CCAATAAGAATGAGGCGAGATGTCTGAAAGAGCCTATCATCATCCCAGTCCGGGTGGACC 30958084 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 |||| ||||| || || | ||| ||||| || |||||||| ||||| ||||||||| Sbjct 30958083 TCCTTCAAGACATCACAAACGCGGTTATGTTCTCTTAGCCAGATGGTAGCATACATCATG 30958024 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 |||||||| ||||||||||| ||||| || || ||||| | || | ||| || || Sbjct 30958023 AGACCAGGAACCAGGCCAAAGGCCTCATGGCCCACAGCGAATCGTTGAGATTCTGGAACA 30957964 Query 9793 TCGGGAGGATAGATCATGTGCAC 9815 | |||||||||| ||||| ||| Sbjct 30957963 TGGGGAGGATAGTGCATGTCCAC 30957941 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCC 8758 || ||||||||| | || || || ||| | | |||| | ||||| || ||| || Sbjct 30960270 CCCTTGACGTTGTTGCATACCAGCCTCTGTAGGGATGCAGTGTTGACAATGTTAAAGCCA 30960211 Query 8759 ACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATG 8818 || || || ||||||||||| |||||||| | || ||||| || || |||| Sbjct 30960210 ACACTCCCACCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATAGGATTTCCCATC 30960151 Query 8819 AGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTG 8878 |||||||| ||||| | || || |||| ||| | ||| |||| || || ||| | ||| Sbjct 30960150 AGGCCTTTAAGGGAGTAGGGTGCACCCATCTCTACCATGGTCTCCCCAAATATGCCATTG 30960091 Query 8879 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTC 8925 | | |||||| ||||||| || || | ||| | ||||||||| || Sbjct 30960090 GTTCTGGGCTTCTCCACCAGCAAACCTGGGTAGAGCTCCACAGCATC 30960044 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | ||| |||||||| || | ||| | ||||| || | | || | Sbjct 30957070 TCACCTACGACTCCCATAGGGGTTGGACAGTCCTTAGGCAAAGGAGGGAGGGTGCGTGTG 30957011 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| ||||| |||||||||||||| || || ||||| || ||| || | Sbjct 30957010 TAGTAGGAGAGGTTGGAATAAGCTTCCCAGCTTTTATAATCATAGTCTGCATTGAAGGTT 30956951 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTG 10437 ||||||||||| |||| || ||| | | ||| Sbjct 30956950 GGAGGGCTGTCTATCATATGGGAGCGAGCTG 30956920 >seq13 Length=36369518 Score = 107 bits (118), Expect = 3e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCT--CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||| || |||| || |||| || || || |||||||| |||||||| | |||| Sbjct 9278513 TTGACAATATCAAAGCCT--GTCTGGCCACCAAACGTGCTGGGCTTCCAGTACTCAGGGG 9278456 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| ||| | | |||||||| ||||| |||||||| |||| || | |||| Sbjct 9278455 AACAGATTGGGTTACCTAGAAGGCCTTTCAGGGAGAACGGAGCTCCCATTTCCACCATGC 9278396 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 ||||||| || ||||| | | | || | ||| |||| || || ||| ||| ||||||| Sbjct 9278395 TCTCACCAAATATGGCTTGGTGGCGTGTCTTCTCCAGCATGAGGGCGGGGTAGAACTCCA 9278336 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || || ||||| || || || Sbjct 9278335 GCGCATCTATGTCACCATAGAG 9278314 >seq3 Length=29826154 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || || || |||||||| || | ||||||| ||| || ||||| ||||| ||||| Sbjct 6420821 ATCAGGCGCGTGGTCTGGAAGATGCGTTCGTCGTCCCAGTCGGGATGCTCTCGCTTCAGG 6420880 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || || || | |||||| ||||| ||||| || || || ||||||||||| || || Sbjct 6420881 ACGTCACAGACGCGGTTGTGCTCCCTCAGCCATATGGTGGCATACATCATGAGCCCTGGG 6420940 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9772 | ||||||||| ||| || || || |||| Sbjct 6420941 AGGAGGCCAAAATGCTCGTGGCCCACGGCCA 6420971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708515775165360