Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15 118 7e-22 seq645 113 3e-20 seq13 102 5e-17 seq23 100 2e-16 seq20 98.7 7e-16 >seq15 Length=32003092 Score = 118 bits (130), Expect = 7e-22 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || ||||| |||||||| ||||||||| || || || Sbjct 15098211 CCAACCAAATTCTTTGGTTGTGAGCTTGGTGCTCAGACCCAGTTTGATGCGAAGAATGAC 15098270 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| |||||||| ||| | | ||| |||||||| | || || || ||| Sbjct 15098271 CGCTACATCGTCAACGGATCCCATGAGGCAAATAAGTTGCAGGACATGCTAGATGGATTT 15098330 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || | |||||||||||||||| || || |||||||| || ||||| || Sbjct 15098331 ATCAGGAAGTTTGTGCTGTGTCCTGAGTGTGATAACCCTGAAACCGATCT 15098380 >seq645 Length=529590 Score = 113 bits (124), Expect = 3e-20 Identities = 80/92 (87%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct 63797 AAGCCCGTTCCCTTGGCTGTGGTATCACTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 63738 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | |||| ||||||||| ||||||||||||||| Sbjct 63737 TCATCCATTCATGCGCATCACTAATTAGATGA 63706 >seq13 Length=36369518 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | Sbjct 28160788 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCTGCTATCGGTCTCGTG 28160729 Query 20008 GTAATATTTAGCCTTA 20023 |||||||||||| Sbjct 28160728 CCGGTATTTAGCCTTA 28160713 >seq23 Length=23871453 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || ||||| ||||||||| ||| ||||| Sbjct 19427415 CCCACCAAATTCTTTGGTTGTGAGTTGGGTGCCCAGACCCAGTTTGATGCCAAGAACGAC 19427474 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||||||| || || || || ||| | | |||| |||||||| | || || || || Sbjct 19427475 CGCTTCATTGTCAATGGGTCCCATGAGGCAAACAAGTTGCAGGACATGCTGGATGGATTC 19427534 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || || |||||||||||||| | |||||||| || || || || || || Sbjct 19427535 ATCCGGAAGTTTGTGCTGTGCCCCGAATGCGACAATCCCGAAACTGACCT 19427584 >seq20 Length=42629069 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct 36123446 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCTTTACGGTACTTGTCTGCTATCGGTCTCGT 36123387 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 36123386 GCCGGTATTTAGCCTTA 36123370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943040269789