Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 seq14 114 1e-20 seq8 82.4 6e-11 >seq7 Length=46052510 Score = 116 bits (128), Expect = 3e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||||||| || || || || || | || || || || |||| || || || || | Sbjct 22020057 AAAGATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCC 22020116 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAG-ACAAGGAGGGTATTCCACCCG 22333 | ||| ||| | || || | || || || | || |||||||||| ||||| || | Sbjct 22020117 AAGCGACACCATTGAGAATGTGAAGGCCAAGATGCCAGGACAAGGAGGGCATTCCCCCAG 22020176 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || ||||| || ||||||||||| ||| | || ||| ||||||| | ||||| | Sbjct 22020177 ACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACT 22020236 Query 22394 ACAACATTCAAAAAGAATCCACCATACAT 22422 ||||||| || |||||||||||| | ||| Sbjct 22020237 ACAACATCCAGAAAGAATCCACCCTTCAT 22020265 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || | | | Sbjct 22020517 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020576 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| || || || || | | Sbjct 22020577 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCCA 22020636 Query 22339 -CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||||| || ||||||||||| ||| | || ||| ||||||| ||||| ||||| Sbjct 22020637 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTCTTCCGACTACAA 22020696 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || |||||||||||| Sbjct 22020697 CATCCAGAAAGAATCCACC 22020715 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGAT-CAACAACGTCTTATATTTGCCGGCAA 22361 || || || ||||||||||| || || || || || || ||||| || ||||||||||| Sbjct 22020828 AAGATCCAGGACAAGGAGGGCATCCCCCCAGACGCAGCAGCGTCTGATCTTTGCCGGCAA 22020887 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 ||| | || ||| ||||||| | ||||| |||||||| || |||||||||||| | || Sbjct 22020888 GCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAACATCCAGAAAGAATCCACCCTTCA 22020947 Query 22422 T 22422 | Sbjct 22020948 T 22020948 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || | | | Sbjct 22020290 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020349 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| || || || || || Sbjct 22020350 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 22020409 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||| |||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 22020410 CAGCGTCTGATCTTTG-CGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAAC 22020468 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 22020469 ATCCAGAAAGAGTCCACC 22020486 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG-CCGGCAA 22361 || || || ||||||||||| ||||| ||| || || ||||| || |||| ||||||| Sbjct 22021056 AAGATCCAGGACAAGGAGGGCATTCCCCCCAGACAGCAGCGTCTGATCTTTGGCCGGCAA 22021115 Query 22362 ACAGTTAGAGGATCACC-GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATAC 22420 ||| | || ||| || ||||| | ||||| |||||||| || |||||||||||| | | Sbjct 22021116 GCAGCT-GAAGATGGCCCGCACCCTTTCCGACTACAACATCCAGAAAGAATCCACCCTTC 22021174 Query 22421 AT 22422 || Sbjct 22021175 AT 22021176 >seq14 Length=34043612 Score = 114 bits (126), Expect = 1e-20 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 ||| |||||||| || ||||| || || | || || || || |||| || || || || Sbjct 21659971 TGTCAAGATGCAGATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGA 21660030 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| || ||| | || || |||| ||||| | || ||||||||||| || || || Sbjct 21660031 GCCCAGTGACACCATCGAGAATGTCAAGCAAAA--TCCAGGACAAGGAGGGCATCCCCCC 21660088 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || ||||| || || |||||||| ||| | || ||| |||||| ||||||| Sbjct 21660089 AGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGA 21660148 Query 22392 TTACAACATTCAAAAAGAATCC 22413 |||||||| || || || ||| Sbjct 21660149 CTACAACATCCAGAAGGAGTCC 21660170 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || ||||| || |||| || || | || ||| Sbjct 21660657 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTGGAGGGTGAGCCCAGT 21660716 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || || ||||||||||| || || || || || Sbjct 21660717 GACACCATCGAGAATGTCAAGGCAAAGATCCA-GACAAGGAGGGCATCCCCCCAGACCAG 21660775 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC-AA 22397 || ||||| || || |||||||| ||| | || ||| |||||| ||||||| ||| || Sbjct 21660776 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAA 21660835 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 21660836 CATCCAGAAGGAGTCCACC 21660854 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || ||||| || |||| || || || || ||| Sbjct 21660202 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCT-GAGGTTGAGCCCAGT 21660260 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||| || || || || || || Sbjct 21660261 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGGAGGCATCCCCCCAGACCAG 21660320 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAG-AGGATCACCGCACCGTCTCCGATTACAA 22397 || ||||| || || |||||||||||| | | | ||| |||||| ||||||| ||||| Sbjct 21660321 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAAGATGGTCGCACCCTCTCCGACTACAA 21660380 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || |||||| Sbjct 21660381 CATCCAGAAGGAGTCCACC 21660399 >seq8 Length=32939842 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || ||||| || |||||||| ||||| |||||||| ||||||||| | |||||| ||| Sbjct 3064657 GGCATTCCCCCTGATCAACAGCGTCTGATATTTGCTGGCAAACAGCTTGAGGATGGTCGC 3064716 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || | || ||||||||||| || |||| Sbjct 3064717 ACTTTGTCAGATTACAACATCCAGAAAG 3064744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419722787371735