Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 111 3e-19 seq18 91.5 3e-13 seq10 87.8 3e-12 >seq7 Length=46052510 Score = 111 bits (122), Expect = 3e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 ||||||||||||||| |||||||| || || | ||| || || |||| ||| || || || Sbjct 17697389 CTGCATGAAGAGGTCAGGGATCCACAGAGCATAGAACAGATCTCTGGCCCTTTGTTCCTC 17697330 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | || ||||||||| |||| |||| |||||||| ||||| | |||||| ||||||| Sbjct 17697329 CTTCCCGGTGTTCTTCTTCAGATCCAGGAAGTCAAACACGTCAAAGTGCCACGGCTCCAA 17697270 Query 245128 GTAGACAGC 245136 ||| | ||| Sbjct 17697269 GTACATAGC 17697261 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | ||||||||| |||||||| || |||||||||||| |||| ||||| Sbjct 17698939 CACCTCATCATGGCTGGTGTACTCTACAATCTCAGTACAGAGGTTACTGGACTTTATGGT 17698880 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || ||| ||| |||||||| ||||| || |||||| | || Sbjct 17698879 GCCCAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCATCCTTATAAAGCATGTAAGGGGT 17698820 Query 244825 CCCGGTCTCGAGCTGGG 244841 |||||||| ||||| Sbjct 17698819 TCCGGTCTCAGTCTGGG 17698803 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCA 244376 || ||| |||||||| ||| || | |||||| || || || | || | | |||| Sbjct 17699743 CACCCCTTTGCTGACAGGGGACCCTGCATAGGTCTCATATGGGCCAT-GCTCAGCAGCCA 17699685 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| |||||| || ||||| || |||||||| ||||| |||||| |||| | | Sbjct 17699684 GCTCACAGCTGGACTCAAGGGCAGCATAGTAGATAGTCTCAAAGATCTGAGTGTTGAGCT 17699625 Query 244437 CGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 |||||| ||| || || | | ||||| || ||| | |||||||| |||| Sbjct 17699624 TCTGGGCCTCTGCGCTCTCAAACGGAAAACGCATCAGGATAAAGGCATCGGCCAGACCCT 17699565 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 | || || ||||||||||| ||||| |||||||||||| Sbjct 17699564 GGACACCAATGCCGATGGGCCTGTGGCGCTTGTTGGAG 17699527 >seq18 Length=26030928 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 ||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||| | Sbjct 19430610 CCCTTTGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAGAGA 19430551 Query 43131 GTCGCCGACTACCAG 43145 || | || |||||| Sbjct 19430550 GTAGGGGAGTACCAG 19430536 >seq10 Length=26897606 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || | || |||||| | || || ||||| ||||||||||| || | || || Sbjct 26346813 GGAGAGCGGTTAGTTGCCTTTGCAGCAGTGGAGGGAATCTTCTTCTCAGGGTCATTTGCT 26346872 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| ||| | || ||| ||| | |||||| |||||||||| ||| || || || Sbjct 26346873 GCCATCTATTGGTTAAAAAAGAGAGGCCT-GATGCCGGGACTCACCTACTCCAATGAGCT 26346931 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| || |||| Sbjct 26346932 CATCAGCAGAGATGAGG 26346948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944327171479440