Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 138 3e-27 seq14 116 9e-21 seq8 89.7 1e-12 >seq7 Length=46052510 Score = 138 bits (152), Expect = 3e-27 Identities = 174/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||||| || || ||||||| ||| |||||| ||||| || |||| Sbjct 22020975 CATG-CCGCCCCTGAGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGT 22020917 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| | || || || || |||||||||||||| || | | Sbjct 22020916 CGGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGCG--T 22020859 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| || || || |||||||| || || ||||| || || || | ||||| | Sbjct 22020858 CTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTG 22020799 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || ||| | ||||| |||||||| Sbjct 22020798 GCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTC-TCACGAAGATCTGCAT 22020745 Score = 136 bits (150), Expect = 9e-27 Identities = 174/236 (74%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||||| || || ||||||| ||| |||||| ||||| || |||| Sbjct 22020292 CATG-CCGCCCCTGAGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGT 22020234 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| | || || || || |||||||||||||| || | Sbjct 22020233 CGGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTG---GT 22020177 Query 288362 CTGGG---ATTCCTTCTTTATCCTGG-ATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 ||||| || || || || |||||| || || || ||||| || || || | ||||| Sbjct 22020176 CTGGGGGAATGCCCTCCTTGTCCTGGCATCTTGGCCTTCACATTCTCAATGGTGTCGCTT 22020117 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 22020116 GGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 22020061 Score = 132 bits (146), Expect = 1e-25 Identities = 175/236 (74%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||||| || || |||||| ||| |||||| ||||| || |||| Sbjct 22020747 CATG-CCGCCCCTGAGTCGGAGCACCAGATGAGG-GTGGATTCTTTCTGGATGTTGTAGT 22020690 Query 288302 CGGC-GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAA 288360 ||| ||| ||||| || ||||| | || || || || |||||||||||||| || | Sbjct 22020689 CGGAAGAG-GTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGG-- 22020633 Query 288361 TCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 ||| ||||| || || || |||||||| || || ||||| || || || | ||||| Sbjct 22020632 TCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTT 22020573 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 22020572 GGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 22020517 Score = 129 bits (142), Expect = 1e-24 Identities = 172/235 (73%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||||| || || || |||| ||| ||||| ||||| || |||| Sbjct 22020519 CATG-CCGCCCCTGAGTCGGAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGT 22020461 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| | || || || || |||||||||||||| || | Sbjct 22020460 CGGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCC-GCAAAGATCAGACGCTGCTG---GT 22020405 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| || || || |||||||| || || ||||| || || || | ||||| | Sbjct 22020404 CTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTG 22020345 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 22020344 GCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 22020290 Score = 125 bits (138), Expect = 2e-23 Identities = 176/240 (73%), Gaps = 13/240 (5%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 |||||| ||||| | ||||| || || ||||||| ||| |||||| ||||| || || Sbjct 22021205 TACATG-CCACCCCTGAGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTA 22021147 Query 288300 GTCGGCGAGCGTGCGT-CCGTCTTCTAATTGTTTTCCTGCGAA-GATCAGACGCTGTTGA 288357 ||||| || ||||| || ||||| | || || || || || |||||||||||| || Sbjct 22021146 GTCGGAAAGGGTGCGGGCCATCTTC-AGCTGCTTGCCGGCCAAAGATCAGACGCTGCTG- 22021089 Query 288358 GAATCTGGG----ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC 288413 |||||| || || || || |||||||| || || ||||| || || || | || Sbjct 22021088 ---TCTGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC 22021032 Query 288414 GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || ||||| ||||| ||| | || || || ||||| ||||| |||||||| Sbjct 22021031 GCTTGGCTCGACCTCGAGGGTGATGGTC-TGCCTGTGAGGGTCTTCACGAAGATCTGCAT 22020973 >seq14 Length=34043612 Score = 116 bits (128), Expect = 9e-21 Identities = 156/213 (73%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 21660640 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 21660581 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||||||||| || | | ||||| || || || ||| Sbjct 21660580 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG-GTCTGGGGGATGCCCTCCTTGTCC 21660522 Query 288382 TGGATTTTCG-CTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||||| || | |||| || || || || | || || | || || || || ||||| || Sbjct 21660521 TGGATCTTGGCCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTC-AGGGTGATGGT 21660463 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||| ||||| || || |||||||| Sbjct 21660462 CTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660430 Score = 114 bits (126), Expect = 3e-20 Identities = 144/194 (74%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| || ||||| | || || || |||||| Sbjct 21660166 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAG 21660107 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||||| || || || || ||||||||||| || || || Sbjct 21660106 ATCAGACGCTGCTGG---TCTGGGGGGATGCCCTCCTTGTCCTGGATTTT-GC-TTGACA 21660052 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| || ||||| ||||| Sbjct 21660051 TTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTT 21659992 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 21659991 ACAAAGATCTGCAT 21659978 Score = 113 bits (124), Expect = 1e-19 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 21660413 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 21660354 Query 288322 T-CTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 | | | ||||| || ||||||||||||||||| || ||| ||||| ||| | || Sbjct 21660353 TTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTG---GTCTGGGGGGATGCCTCCCTT 21660297 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 |||||||| || || || || || || || | || || | || || || || ||||| Sbjct 21660296 GTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTC-AGGGTGAT 21660238 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || || |||||||| Sbjct 21660237 GGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660202 Score = 100 bits (110), Expect = 7e-16 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTA-TAGTCGGCGAGCGTGCGTCCGTC 288320 || || || |||| ||| || || ||||| || ||||||| ||| ||||| || || Sbjct 21660868 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTTGTAGTCGGAGAGGGTGCGACCATC 21660809 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 ||| | || || || ||||||||||||||||| || ||| ||||| || || || Sbjct 21660808 TTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---GTCTGGGGGGATGCCCTCCTT 21660752 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 | |||||| || || || || || || || | || || | || | || || ||||| Sbjct 21660751 GT-CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCACCCTCCAGGGTGAT 21660693 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || || |||||||| Sbjct 21660692 GGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660657 Score = 100 bits (110), Expect = 7e-16 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| ||| || || ||||| || ||||||| | Sbjct 21661109 CCACCACGGAGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 21661050 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTG-TTGAGAATCTGG 288365 || ||||| || ||||| | || | ||||||||||||||||| ||| | | || Sbjct 21661049 AGGGTGCGACCATCTTCCCCGC-TGTTGCGGCGAAGATCAGACGCTGCTTGGGTCTGGGG 21660991 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||| | || |||||||| | || | | || || || | || || | || || Sbjct 21660990 GATGCCTCCCTTGTCCTGGATCT--GCCTGGAACTTCTCAATGGTGTCACTGGGCTCAAC 21660933 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 21660932 CTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 21660885 >seq8 Length=32939842 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || || || || ||||| || | |||||| | ||||| || Sbjct 3064556 CCTTCCTTATCCTGGATCTTAGCCTTGACATTTTCGATGGTATCGCTGGGCTCTACCTCA 3064497 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| |||| ||||| ||||| |||||||| Sbjct 3064496 AGGGTGATGGTTTTCCCCGTCAACGTCTTTACGAAGATCTGCAT 3064453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179638998505882