Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq11 150 1e-30 seq20 109 4e-18 seq7 102 7e-16 seq12 95.1 1e-13 seq1 89.7 4e-12 >seq11 Length=44859740 Score = 150 bits (166), Expect = 1e-30 Identities = 442/679 (65%), Gaps = 2/679 (0%) Strand=Plus/Plus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 ||||| || || ||||| || ||||| | | || || || | | || ||| || Sbjct 43497387 CTAAGGACGGCCTGCGAGAGGGCCAAGAGGACCCTGTCTTCCAGCTCCCAGGCCAACGTT 43497446 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 || | || || | || ||||| ||||| | | || | | | |||||| ||| Sbjct 43497447 GAGATCGACTCTYTGTTCGAGGGCATTGACTTCTACACCTCAGTCACCAGGGCCCGTTTT 43497506 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 || || || ||||| ||||||||||| ||| | || || || || ||| |||| Sbjct 43497507 GAGGAGATGTGTTCAGATCTCTTTAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTAAGG 43497566 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||||| || || ||| | | |||| ||||| || ||||| || || || | Sbjct 43497567 GATGCCAAGATGGACAAGTCCCACATCAATGATATTGTCCTGGTTGGAGGCTCCACCCGG 43497626 Query 552147 ATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205 || || ||| | | | | | || ||| |||||| || | | || |||| | || Sbjct 43497627 ATCCCCAAAGTCCAGAAGCTCCTGCAGGACTT-TTTCAACGGCAGAGAACTAAACAAGAG 43497685 Query 552206 TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG 552265 | || ||||||||||| |||||||| ||||| || | || || || ||| | ||||| Sbjct 43497686 CATCAACCCAGATGAGGCAGTTGCCTACGGTGCTGCTGTACAGGCGGCCATTTTGTCTGG 43497745 Query 552266 ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 | | ||| || | || | | || | | || || ||||||| || || || Sbjct 43497746 TGACAAGTCTGAGAATGTCCAGGACCTGCTATTGCTGGACGTGGCTCCTCTGTCCCTGGG 43497805 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | || || | ||||| | |||||| ||| ||| | | || ||||| ||||| | Sbjct 43497806 CATCGAGACCGCCGGAGGGGTCATGACTGCTCTGATCAAACGCAACACTACAATTCCATC 43497865 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||| | | | | || |||| ||| | || || ||| ||| || || || | Sbjct 43497866 CAAACAGACCCAGATCTTCACTACCTATGCTGACAACCAACCTGGCGTCCTGATCCAGGT 43497925 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 |||||| ||||| ||| | || || ||||| || | || || | ||| | | Sbjct 43497926 TTTTGAGGGAGAGAGAGCCATGACCAAGGATAACAACCTTCTGGGGAAGTTTGAGCTCTC 43497985 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || || || ||||| || |||||||| || || || || || ||||| || |||||||| Sbjct 43497986 CGGGATCCCCCCTGCCCCACGTGGAGTCCCTCAGATCGAGGTGACTTTTGACATCGATGC 43498045 Query 552566 CAATGGAATTTTGAATGTG 552584 |||||||||| | || ||| Sbjct 43498046 CAATGGAATTCTAAACGTG 43498064 Score = 136 bits (150), Expect = 3e-26 Identities = 445/681 (65%), Gaps = 9/681 (1%) Strand=Plus/Plus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAG--CTCTTTCATCTGGTACTCAAACCACTA 551964 ||||| || || ||||| || |||||| ||| | || || || | | || ||| Sbjct 43486667 CTAAGGACGGCCTGCGAGAGGGCCAAA-GAGGACCCTGTCTTCCAGCTCCCAGGCCAACG 43486725 Query 551965 TTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAAT 552024 |||| | || || || || ||||| ||||| | | || | | | |||||| | Sbjct 43486726 TTGAGATCGACTCTTTGTTCGAGGGCATTGACTTCTACACCTCAGTCACCAGGGCCCGTT 43486785 Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAA 552084 |||| || || ||||| ||||||||||| ||| | || || || || ||| ||| Sbjct 43486786 TTGAGGAGATGTGTTCAGATCTCTTTAGGGGAACCCTGGAGCCTGTGGAGAAAGCCCTAA 43486845 Query 552085 GAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAA 552144 | ||| | ||||| || || ||| | | |||| ||||| || ||||| || || || Sbjct 43486846 GGGATGCCAAGATGGACAAGTCCCACATCAATGATATTGTCCTGGTTGGAGGCTCCACCC 43486905 Query 552145 GAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAA 552203 | || || ||| | | | | | || ||| |||||| | | | || |||| | Sbjct 43486906 GGATCCCCAAAGTCCAGAAGCTCCTGCAGGACTT-TTTCAACGC-AGAGAACTAAACAAG 43486963 Query 552204 AGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT 552263 || | || ||||||||||| |||||||| ||||| || | || || || ||| | ||| Sbjct 43486964 AGCATCAACCCAGATGAGGCAGTTGCCTACGGTGCTGCTGTACAGGCGGCCATTTTGTCT 43487023 Query 552264 GGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 || | | ||| || | || | | || | | || || ||||||| || || Sbjct 43487024 GGTGACAAGTCTGAGAATGTCCAGGACCTGCTATTGCTGGACGTGGCTCCTCTGTC-CTG 43487082 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 || | || || | ||||| | |||||| ||| ||| | | || ||||| ||||| Sbjct 43487083 GGCATCGAGAC-GCCGGAGGGGTCATGACTGCTCTGATCAAACGCAACACTACAATTCCA 43487141 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 | ||| | | | | || |||| ||| | || || ||| ||| || || || Sbjct 43487142 TCCAAACAGACCCAGATCTTCACTACCTATGCTGACAACCAACCTGGCGTCCTGATCCAG 43487201 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 ||||||| ||||| ||| | || || ||||| || | || || | ||| | | Sbjct 43487202 GTTTTTGAGGGAGAGAGAGCCATGACCAAGGATAACAACCTTCTGGGGAAGTTTGAGCTC 43487261 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 || || || ||||| || |||||||| || || || || || ||||| || |||||| Sbjct 43487262 TCCGGGATCCC-CCTGCCCCACGTGGAGTCCCTCAGATCGAGGTGACTTTTGACATCGAT 43487320 Query 552564 GCCAATGGAATTTTGAATGTG 552584 |||||||||||| | || ||| Sbjct 43487321 GCCAATGGAATTCTAAACGTG 43487341 Score = 127 bits (140), Expect = 2e-23 Identities = 389/589 (66%), Gaps = 18/589 (3%) Strand=Plus/Plus Query 549993 CTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAG 550052 |||| || || ||| |||| ||||| || ||||| || || | || |||| |||| Sbjct 43496617 CTATTGGCATTGATCTAGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAAG 43496676 Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 | || ||||| ||||| || || || ||| | || || || ||||| | || || | Sbjct 43496677 TGGAGATTATCGCCAACGACCAGGGCAACCGGACCACGCCCAGCTATGTGGCCTTTACAG 43496736 Query 550113 AAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACC 550168 | || || | | | | | || ||||||||||| | || ||| | || ||||| | Sbjct 43496737 ACACAGAGAGACTCA-TCGGAGATGCAGCAAAGAACCAGGTAGCGA-TG--AATCCAAAT 43496792 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || ||||||||||||| ||| | ||||| | | ||| |||||||| || || Sbjct 43496793 AACACCGTTTTTGATGCTAAGCGTCTGATTGGCCGGAAGTTTGATGATTCGGTCGTCCAA 43496852 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 ||||||||||||||||||| ||| | || | | || ||||||||| | || || Sbjct 43496853 TCAGATATGAAGCATTGGCCCTTCAAGGTTATCAGTGACGGAGGAAAACCTAAAGTTCAA 43496912 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATT--TTCA--CCAGAACAAATTTCATCTATGGT 550344 | | |||| || || ||| | |||| ||||| | || || || ||||| Sbjct 43496913 GTAGAATACAAAGG---TG-AAACCAAATCCTTCAACCCAGAGGAGATATCTTCCATGGT 43496968 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | | || ||||| | | || || | | || || | || | | ||||| Sbjct 43496969 CCTGGTAAAGATGAAGGAGATTGCTGAAGCCTACCTGGGCCATAAGGTGTCCAACGCAGT 43497028 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || ||||| || || || ||||| ||||| || | || || |||||||| |||||| Sbjct 43497029 CATCACTGTCCCCGCCTACTTTAACGACTCCCAGAGACAGGCCACTAAAGACGCTGGAGT 43497088 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 || || ||| | || || || | || || ||||| || || || || || |||| || Sbjct 43497089 CATAGCAGGATTGAACGTGCTGAGGATCATTAATGAGCCCACGGCAGCAGCCATTGCCTA 43497148 Query 550525 TGGACTTGATAAACATAATGATCAA-GAACTTAATGTACTCATCTTTGA 550572 || | || ||| || | ||| |||| ||||| || |||||||| Sbjct 43497149 CGGCATGGACAAAGGCAA-GTCCAAGGAACGCAATGTCCTGATCTTTGA 43497196 Score = 123 bits (136), Expect = 2e-22 Identities = 389/589 (66%), Gaps = 19/589 (3%) Strand=Plus/Plus Query 549993 CTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAG 550052 |||| || || ||| |||| ||||| || ||||| || || | || |||| |||| Sbjct 43485898 CTATTGGCATTGATCTAGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAAG 43485957 Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 | || ||||| ||||| || || || ||| || | ||| || |||| | || || | Sbjct 43485958 TGGAGATTATCGCCAACGACCAGGGCAACCGACCACGCCCAGCT-ATGTGGCCTTTACAG 43486016 Query 550113 AAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACC 550168 | || || | | | | | || ||||||||||| | || ||| | || ||||| | Sbjct 43486017 ACACAGAGAGACTCA-TCGGAGATGCAGCAAAGAACCAGGTAGCGA-TG--AATCCAAAT 43486072 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || ||||||||||||| ||| | ||||| | | ||| |||||||| || || Sbjct 43486073 AACACCGTTTTTGATGCTAAGCGTCTGATTGGCCGGAAGTTTGATGATTCGGTCGTCCAA 43486132 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 ||||||||||||||||||| ||| | || | | || ||||||||| | || || Sbjct 43486133 TCAGATATGAAGCATTGGCCCTTCAAGGTTATCAGTGACGGAGGAAAACCTAAAGTTCAA 43486192 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATT--TTCA--CCAGAACAAATTTCATCTATGGT 550344 | | |||| || || ||| | |||| ||||| | || || || ||||| Sbjct 43486193 GTAGAATACAAAGG---TG-AAACCAAATCCTTCAACCCAGAGGAGATATCTTCCATGGT 43486248 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | | || ||||| | | || || | | || || | || | | ||||| Sbjct 43486249 CCTGGTAAAGATGAAGGAGATTGCTGAAGCCTACCTGGGCCATAAGGTGTCCAACGCAGT 43486308 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || ||||| || || || ||||| ||||| || | || || |||||||| |||||| Sbjct 43486309 CATCACTGTCCCCGCCTACTTTAACGACTCCCAGAGACAGGCCACTAAAGACGCTGGAGT 43486368 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 || || ||| | || || || | || || ||||| || || || || || |||| || Sbjct 43486369 CATAGCAGGATTGAACGTGCTGAGGATCATTAATGAGCCCACGGCAGCAGCCATTGCCTA 43486428 Query 550525 TGGACTTGATAAACATAATGATCAA-GAACTTAATGTACTCATCTTTGA 550572 || | || ||| || | ||| |||| ||||| || |||||||| Sbjct 43486429 CGGCATGGACAAAGGCAA-GTCCAAGGAACGCAATGTCCTGATCTTTGA 43486476 >seq20 Length=42629069 Score = 109 bits (120), Expect = 4e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || || ||||||||||| ||||| ||||| || ||||||||| Sbjct 21970719 GCTGTCATCACAGTCCCCGCCTACTTTAATGACTCCCAACGCCAAGCAACCAAAGATGCT 21970660 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||||||||| || || | ||||| |||||||| || || ||||| || || Sbjct 21970659 GGTGTGATTGCTGGACTCAACGTAATGCGTATCATCAATGAGCCCACCGCTGCAGCCATT 21970600 Query 550520 GCATATGGACTTGATAAA 550537 |||||||| || || ||| Sbjct 21970599 GCATATGGCCTGGACAAA 21970582 >seq7 Length=46052510 Score = 102 bits (112), Expect = 7e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 |||| || ||||| || || || ||||| ||||| ||||| || ||||| |||||| | Sbjct 27913351 TAACAGTGCCAGCTTACTTCAACGACTCTCAACGGCAAGCAACCAAAGACGCTGGAACAA 27913292 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| || |||||||| || || |||||||| || ||||||||||| |||| |||| Sbjct 27913291 TCTCTGGTCTGAATGTTCTGCGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTATG 27913232 Query 550527 G 550527 | Sbjct 27913231 G 27913231 Score = 96.9 bits (106), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || ||||| || || || |||||||| || || || || || ||||||| Sbjct 27938090 ATGCTGTTGTTACAGTACCTGCCTACTTCAATGACTCCCAGCGCCAGGCAACAAAAGATG 27938149 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| | || || |||||||| ||||| |||||||| || |||||||| || Sbjct 27938150 CTGGCACTATCTCAGGCCTGAATGTTCTGCGTATCATCAATGAGCCAACTGCTGCGGCCA 27938209 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 27938210 TTGCCTATGG-CTTG 27938223 Score = 87.8 bits (96), Expect = 1e-11 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | || || ||| | |||||||| || ||||| ||||| Sbjct 27936618 ATGTCAAAGGGACCAGCAGTCGGCATTGATCTTGGAACCACCTACTCCTGTGTAGGTGTG 27936677 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| || ||||| || ||||||||||| || || ||||| || |||||| Sbjct 27936678 TTCCAGCATGGCAAGGTTGAGATCATTGCCAATGACCAGGGCAACAGGACCACTCCAAGC 27936737 Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 |||||| | ||||| || | ||| || |||||||||| || || |||| Sbjct 27936738 TATGTTGCCTTCACAGACTCAGAAAGGCTAATTGGTGATGCTGCCAAGAATCA 27936790 >seq12 Length=35272727 Score = 95.1 bits (104), Expect = 1e-13 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || ||||| ||||| || || || ||||| || | || || |||||||||| Sbjct 3952548 ATGCAGTCATCACTGTCCCAGCCTACTTCAACGACTCTCAGAGGCAGGCCACTAAAGATG 3952607 Query 550458 CTGGACGT-ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||| || || ||||||| || |||||| | || ||||| || || || || ||||| Sbjct 3952608 CTGG-YGTGATATCTGGACTGAACGTTCTTAGGATCATCAACGAGCCCACGGCGGCTGCC 3952666 Query 550517 CTTGCATATGGACTTGATAA 550536 | || ||||| || ||||| Sbjct 3952667 ATCGCTTATGGGCTGGATAA 3952686 >seq1 Length=40371802 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || ||||| ||||| || || ||||| || || || || || || ||||| | Sbjct 22274856 ATGCAGTGATCACTGTGCCAGCTTACTTCAATGATTCTCAGCGCCAGGCCACCAAAGACG 22274797 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || || | ||||| || || || || || |||||||| || ||||||||||| Sbjct 22274796 CAGGGACCATCTCAGGACTCAACGTACTACGCATCATCAATGAGCCAACTGCTGCTGCTA 22274737 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 22274736 TTGCCTATGGCCTGGACAA 22274718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029242110684310