Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq13 120 4e-21 seq6 102 1e-15 seq7 86.0 8e-11 >seq13 Length=36369518 Score = 120 bits (132), Expect = 4e-21 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| |||||| | | | |||||||||||| ||||||||||| | | ||| | Sbjct 54674 TGGCCAGCTCGCCGGGAAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGACGTGATGG 54615 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | | |||||| |||| ||||| || || |||| | ||||||| || | |||| Sbjct 54614 TAGACCTCTTGTTGTAGTGGGCCAGGCGAGAGGACTCGCCGGCGATGCGCTCAAAGATGT 54555 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| ||| | |||||||||| | ||| | |||| |||||||| ||||||||| | Sbjct 54554 CGTTCACAGAAGAGTTCATGATCCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGTGGA 54495 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 54494 CCTGCTTCAGGACTTTGTA 54476 >seq6 Length=28932462 Score = 102 bits (112), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| | | | ||| |||||||||||||| ||||| | || | ||| | Sbjct 10407796 TGGCCAGCTCACCGGGGAGCAGCAGCCGCACGGCGGTCTGAATCTCTCTCGAGGTGATGG 10407737 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| |||| |||||||| | ||| |||| || |||| |||| Sbjct 10407736 TAGATCGCTTGTTGTAGTGGGCCAGACGAGATGACTCCCCCGCGATACGTTCGAAGATGT 10407677 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || || |||||||||| ||| | ||| |||||| || ||| ||||| | Sbjct 10407676 CGTTCACGAATGAGTTCATGATTCCCATGGCTTTGGAGGAGATACCGGTGTCCGGGTGAA 10407617 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 10407616 CCTGCTTCAGGACTTTGTA 10407598 Score = 98.7 bits (108), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||||||| ||| | | | ||| || ||||||||||||||||| | || || | Sbjct 10404936 TGGCCAGTTCTCCGGGGAGCAGCAGCCGGACGGCGGTCTGGATCTCTCTCGAAGTAATGG 10404995 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| |||| |||||||| | ||| |||| || |||| || | Sbjct 10404996 TAGATCGCTTGTTGTAGTGGGCCAGACGAGATGACTCCCCCGCGATACGTTCGAATATAT 10405055 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || ||||||||||||| ||| | || ||||||||| ||| ||||| | Sbjct 10405056 CGTTCACGAACGAGTTCATGATTCCCATGGCTTTTGAGGAGATGCCGGTGTCCGGGTGAA 10405115 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || || ||||| Sbjct 10405116 CCTGCTTCAGGACTTTGTA 10405134 >seq7 Length=46052510 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| | ||||| || ||||| ||| | |||||| | ||||||||| Sbjct 23223870 GCTGCAAACTATTTGGACATTAAAGGACTGCTAGATGTCACCTGCAAGACGGTGGCCAAC 23223811 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||| || ||| | || ||||||||| | ||||||||||||||||| Sbjct 23223810 ATGATCAAAGGAAAGACTCCAGAGGAGATCAGGAAGACCTTTAACATCAA 23223761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107055576088023