Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13 170 3e-36 seq6 134 2e-25 seq3 89.7 8e-12 >seq13 Length=36369518 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || |||||||| ||||||| |||||| | | Sbjct 54716 TGTACTTGGTCACGGCCTTGGTGCCCTCGGACACGGCGTGTTTGGCCAGCTCGCCGGGAA 54657 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | || ||| || | |||||| | Sbjct 54656 GCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGACGTGATGGTAGACCTCTTGTTGTAGT 54597 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| || |||| | ||||||| || | |||||||| ||| | ||||||| Sbjct 54596 GGGCCAGGCGAGAGGACTCGCCGGCGATGCGCTCAAAGATGTCGTTCACAGAAGAGTTCA 54537 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||||| ||| | ||| |||||||| ||||||||| |||||||| || || |||| Sbjct 54536 TGATCCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGGACTTTGT 54477 Query 1485710 AAAC 1485713 | || Sbjct 54476 ACAC 54473 >seq6 Length=28932462 Score = 134 bits (148), Expect = 2e-25 Identities = 176/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || ||||| || ||||| || ||||||| || ||| | | Sbjct 10407838 TGTACTTGGTCACGGCCTTAGTCCCCTCGGACACGGCATGTTTGGCCAGCTCACCGGGGA 10407779 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||||||||| ||||| | | | ||| || |||||||| | Sbjct 10407778 GCAGCAGCCGCACGGCGGTCTGAATCTCTCTCGAGGTGATGGTAGATCGCTTGTTGTAGT 10407719 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || | ||| |||| || |||| |||||||| || || ||||||| Sbjct 10407718 GGGCCAGACGAGATGACTCCCCCGCGATACGTTCGAAGATGTCGTTCACGAATGAGTTCA 10407659 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||| || ||| ||||| |||||||| || || |||| Sbjct 10407658 TGATTCCCATGGCTTTGGAGGAGATACCGGTGTCCGGGTGAACCTGCTTCAGGACTTTGT 10407599 Query 1485710 AAAC 1485713 | || Sbjct 10407598 ACAC 10407595 Score = 125 bits (138), Expect = 1e-22 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || || || || ||||| || |||||||||| ||| | | Sbjct 10404894 TGTACTTGGTCACGGCCTTAGTGCCTTCGGACACGGCATGTTTGGCCAGTTCTCCGGGGA 10404953 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||||||||||||||| | | || || |||||||| | Sbjct 10404954 GCAGCAGCCGGACGGCGGTCTGGATCTCTCTCGAAGTAATGGTAGATCGCTTGTTGTAGT 10405013 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || | ||| |||| || |||| || ||||| || |||||||||| Sbjct 10405014 GGGCCAGACGAGATGACTCCCCCGCGATACGTTCGAATATATCGTTCACGAACGAGTTCA 10405073 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| || || |||| Sbjct 10405074 TGATTCCCATGGCTTTTGAGGAGATGCCGGTGTCCGGGTGAACCTGCTTCAGGACTTTGT 10405133 Query 1485710 AAAC 1485713 | || Sbjct 10405134 ACAC 10405137 >seq3 Length=29826154 Score = 89.7 bits (98), Expect = 8e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || |||||||| || || || ||||| || ||||||||| | ||||| || || | | Sbjct 17760510 TATTTGGTGACCGCTTTAGTCCCCTCGGAAACGGCGTGCTTCGCCAGCTCTCCCGGTAGC 17760451 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-G 1485590 | ||| || || |||||||| | ||| ||| || || || ||||||||| || | | Sbjct 17760450 AACAGACGGACTGCGGTCTGTACCTCCCGGCTGGTAATGGTAGAGCGCTTGTT-GTACTG 17760392 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 | ||| || || || || | ||||| || | || |||||||||||| || ||||| Sbjct 17760391 GGTCAGTCGAGATGCTTCAGTCGCAATGCGCTCAAACACGTCGTTGACAAAAGAATTCAT 17760332 Query 1485651 GAT 1485653 ||| Sbjct 17760331 GAT 17760329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916138004322341