Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq11 264 8e-65 seq7 109 4e-18 seq1 95.1 9e-14 >seq11 Length=44859740 Score = 264 bits (292), Expect = 8e-65 Identities = 950/1464 (65%), Gaps = 32/1464 (2%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 ||| || ||||| ||||||||||| | ||||| || || || || |||||||| || | Sbjct 43498064 CACGTTTAGAATTCCATTGGCATCGATGTCAAAAGTCACCTCGATCTGAGGGACTCCACG 43498005 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 | ||||| |||||||| | | ||| | |||||| || ||||| || || | Sbjct 43498004 TGGGGCAGGGGGGATCCCGGAGAGCTCAAACTTCCCCAGAAGGTTGTTATCCTTGGTCAT 43497945 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || || ||||| |||| ||||| || ||| ||| || || | ||| || || Sbjct 43497944 GGCTCTCTCTCCCTCAAAAACCTGGATCAGGACGCCAGGTTGGTTGTCAGCATAGGTAGT 43497885 Query 281611 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || | ||||| | | ||| | |||||||| ||||| | | || | | ||||| | Sbjct 43497884 GAAGA-TCTGGGTCTGTTTGGATGGAATTGTAGTGTTGCGTTTGATCAGAGCAGTCATGA 43497826 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 || || || || || | || || || ||||||| || || | | | | | | Sbjct 43497825 CCCCTCCGGCGGTCTCGATGCCCAGGGACAGAGGAGCCACGTCCAGCAATAGCAGGTCCT 43497766 Query 281730 GAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 | | || ||| | | |||| |||| ||| || || || | ||||||||| || ||| Sbjct 43497765 GGACATTCTCAGACTTGTCACCAGACAA-AATGGCCGCCTGTACAGCAGCACCGTAGGCA 43497707 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848 || || ||||| || || | | | ||||||| | | || |||||||| | || Sbjct 43497706 ACTGCCTCATCTGGGTTGATGCTCTTGTTTAGTTCTCTGCCGTTGAAAAAGTCCTGCAGG 43497647 Query 281849 AGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 || | ||| || || || || || | || |||||||| | ||||| |||| | || Sbjct 43497646 AGCT-TCTGGACTTTGGGGATCCGGGTGGAGCCTCCAACCAGGACAATATCATTGATGTG 43497588 Query 281908 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAA 281967 || || |||| || | |||| || |||| || || || || || | ||||| Sbjct 43497587 GGACTTGTCCATCTTGGCATCCCTTAGGGCTTTCTCCACAGGCTCCAGGGTTCCCCTAAA 43497528 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATT 282025 | |||||||| | || || || || || || || ||| | || || ||||| Sbjct 43497527 GAGATCTGAACACATCTCCTCAAAACGGGCCCTGGT--GACTGAGGTGTAGAAGTCAATG 43497470 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAG---TTTGAGTCGAAGAAGATAGTGCACGT 282082 || ||||||| ||| || | |||| ||| | | ||| | ||||| || | | Sbjct 43497469 CCCTCGAACARAGAGTCGATCTCAA-CGTTGGCCTGGGAGCTG--GAAGACAGGGTCCTC 43497413 Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCAA 282138 || || | || || || |||||||| || | | ||| || | ||| |||| Sbjct 43497412 TTGGCCCTCTCGCAGGCCGTCCTTAGCCTCCTCAGGGCCCGCTTGTTCTGGCTGATG--- 43497356 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198 ||| | |||| || |||||||| || || || | | || || || || ||||| Sbjct 43497355 -TCTTTCTTATGCTTCCTCTTGAACTCCTCCACGAAGTGGCTGACCAGGCGGTTGTCAAA 43497297 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 |||||| || |||| | || | || | ||| || | || | || | |||||||| Sbjct 43497296 ATCTTCCCCACCCAGATGTGTGTCCCCAGCCGTGGCCTTCACCTCAAAGATCCCATCTTC 43497237 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CA 282317 | | || | | |||||| ||| || || |||| ||||| || || ||||| | Sbjct 43497236 GATGGTCAGGATGGACACATCAAWGGTGCCCCCGCCCAGGTCAAAGATCAGGACATTGCG 43497177 Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 || ||| | |||| ||| || | || || |||| || || || || || ||||||| Sbjct 43497176 TTCCTTGGACTTGCCTTTGTCCATG-CCGTAGGCAATGGCTGCTGCCGTGGGCTCATTAA 43497118 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | || |||| || || | || || || ||| || ||||||||||| ||||| || | Sbjct 43497117 TGATCCTCAGCACGTTCAATCCTGCTATGACTCCAGCGTCTTTAGTGGCCTGTCTCTGGG 43497058 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 | |||||||| || || || ||||| || || || | | || | | || | || | Sbjct 43497057 AGTCGTTAAAGTAGGCGGGGACAGTGATGACTGCGTTGGACACCTTATGGCCCAGGTAGG 43496998 Query 282498 CGCTTGCTGTTTGTTTCAT-TTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAAT 282554 | || | | ||||| ||||| | | ||| || || || | ||||| ||| Sbjct 43496997 CTTCAGCAATCTCCTTCATCTTTAC-CAGGACCATGGAAGATATCTCCTCTGGGTTGAAG 43496939 Query 282555 ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 | |||| |||| || ||| ||||| || | ||||| || || | |||| Sbjct 43496938 GAT--TTGGTTTCACCTTTGTATTCTACTTGAACTTTAGGTTTTCCTCCGTCACTGATAA 43496881 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | || || ||||||| |||||||||||||| || |||| ||| | | |||| Sbjct 43496880 CCTTGAAGGGCCAATGCTTCATATCTGATTGGACGACCGAATCATCAAACTTCCGGCCAA 43496821 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || |||||||||| || || ||||||| | || | || | || |||| Sbjct 43496820 TCAGACGCTTAGCATCAAAAACGGTGTTATTTGGATTCATCGCTACCTGGTTCTTTGCTG 43496761 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 ||||||| || || ||||| |||||||| | ||||| || || || || || | Sbjct 43496760 CATCTCCGATGAGTCTCTCTGTGTCTGTAAAGGCCACATAGCTGGGCGTGGTCCGGTTGC 43496701 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | || || || || ||||| || ||||| |||| || | || || ||||| | | Sbjct 43496700 CCTGGTCGTTGGCGATAATCTCCACTTTGCCATGCTGGAACACCCCCACACAGGAGTAGG 43496641 Query 282855 TTGTTCCTAAATCAATACCAATAG 282878 | || |||| |||||| ||||||| Sbjct 43496640 TGGTGCCTAGATCAATGCCAATAG 43496617 Score = 223 bits (246), Expect = 3e-52 Identities = 951/1467 (65%), Gaps = 42/1467 (3%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 ||| || ||||| ||||||||||| | ||||| || || || || |||||||| || | Sbjct 43487341 CACGTTTAGAATTCCATTGGCATCGATGTCAAAAGTCACCTCGATCTGAGGGACTCCACG 43487282 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 | ||||| |||||||| | | ||| | |||||| || ||||| || || | Sbjct 43487281 TGGGGCAGG-GGGATCCCGGAGAGCTCAAACTTCCCCAGAAGGTTGTTATCCTTGGTCAT 43487223 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || || ||||| |||| ||||| || ||| ||| || || | ||| || || Sbjct 43487222 GGCTCTCTCTCCCTCAAAAACCTGGATCAGGACGCCAGGTTGGTTGTCAGCATAGGTAGT 43487163 Query 281611 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || | ||||| | | ||| | |||||||| ||||| | | || | | ||||| | Sbjct 43487162 GAAGA-TCTGGGTCTGTTTGGATGGAATTGTAGTGTTGCGTTTGATCAGAGCAGTCATGA 43487104 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 || || || || || | || || || ||||||| || || | | | | | | Sbjct 43487103 CCCCTCCGGC-GTCTCGATGCCCAG-GACAGAGGAGCCACGTCCAGCAATAGCAGGTCCT 43487046 Query 281730 GAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 | | || ||| | | |||| |||| ||| || || || | ||||||||| || ||| Sbjct 43487045 GGACATTCTCAGACTTGTCACCAGACAA-AATGGCCGCCTGTACAGCAGCACCGTAGGCA 43486987 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848 || || ||||| || || | | | ||||||| | | | |||||||| | || Sbjct 43486986 ACTGCCTCATCTGGGTTGATGCTCTTGTTTAGTTCTCTGCG-TTGAAAAAGTCCTGCAGG 43486928 Query 281849 AGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 || | ||| || || || || || | || |||||||| | ||||| |||| | || Sbjct 43486927 AGCT-TCTGGACTTTGGGGATCCGGGTGGAGCCTCCAACCAGGACAATATCATTGATGTG 43486869 Query 281908 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAA 281967 || || |||| || | |||| || |||| || || || || || | ||||| Sbjct 43486868 GGACTTGTCCATCTTGGCATCCCTTAGGGCTTTCTCCACAGGCTCCAGGGTTCCCCTAAA 43486809 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATT 282025 | |||||||| | || || || || || || || ||| | || || ||||| Sbjct 43486808 GAGATCTGAACACATCTCCTCAAAACGGGCCCTGGT--GACTGAGGTGTAGAAGTCAATG 43486751 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAG---TTTGAGTCGAAGAAGATAGTGCACG- 282081 || ||||||||||| || | |||| ||| | | ||| | ||||| || | | Sbjct 43486750 CCCTCGAACAAAGAGTCGATCTCAA-CGTTGGCCTGGGAGCTG--GAAGACAGGGTCCTC 43486694 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 282137 ||| || | || || || |||||||| || | | ||| || | ||| |||| Sbjct 43486693 TTTGGCCCTCTCGCAGGCCGTCCTTAGCCTCCTCAGGGCCCGCTTGTTCTGGCTGATG-- 43486636 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA-TTATCA 282196 ||| | |||| || |||||||| ||| || | | | || || || || ||| Sbjct 43486635 --TCTTTCTTATGCTTCCTCTTGAACTCTCCACGA-AGTGGCTGACCAGGCGTGTTGTCA 43486579 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG-TCCATC 282255 |||||||| || |||| | || | || | ||| || | || | || | |||||| Sbjct 43486578 AAATCTTCCCCACCCAGATGTGTGTCCCCAGCCGTGGCCTTCACCTCAAAGATCTCCATC 43486519 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 ||| | | || | | |||||| | | || || |||| ||||| || || ||||| Sbjct 43486518 TTCGATGGTCAGGATGGACACATCAATG-TGCCCCCGCCCAGGTCAAAGATCAGGACATT 43486460 Query 282316 -CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 | || ||| | |||| ||| || | || || |||| || || || || || |||| Sbjct 43486459 GCGTTCCTTGGACTTGCCTTTGTCCATG-CCGTAGGCAATGGCTGCTGCCGTGGGCTCAT 43486401 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 |||| || |||| || || | || || || ||| || ||||||||||| ||||| | Sbjct 43486400 TAATGATCCTCAGCACGTTCAATCCTGCTATGACTCCAGCGTCTTTAGTGGCCTGTCTCT 43486341 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATAT 282494 | || |||||||| || || || ||||| || || || | | || | | || | | Sbjct 43486340 GGGAGTCGTTAAAGTAGGCGGGGACAGTGATGACTGCGTTGGACACCTTATGGCCCAGGT 43486281 Query 282495 AAGCGCTTGCTGTTTGTTTCAT-TTTACTTAAAATCATTGATGAAATTTGTTCTGGA--G 282551 | || || | | ||||| ||||| | | ||| || || || | ||||| | Sbjct 43486280 AGGCTTCAGCAATCTCCTTCATCTTTACC-AGGACCATGGAAGATATCTCCTCTGGGTTG 43486222 Query 282552 AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611 || | |||| |||| || ||| ||||| || | ||||| || || | | Sbjct 43486221 AAGGAT--TTGGTTTCACCTTTGTATTCTACTTGAACTTTAGGTTTTCCTCCGTCACTGA 43486164 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 |||| || || ||||||| |||||||||||||| || |||| ||| | | | Sbjct 43486163 TAACCTTGAAGGGCCAATGCTTCATATCTGATTGGACGACCGAATCATCAAACTTCCGGC 43486104 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 |||| | || || |||||||||| || || ||||||| | || | || | || | Sbjct 43486103 CAATCAGACGCTTAGCATCAAAAACGGTGTTATTTGGATTCATCGCTACCTGGTTCTTTG 43486044 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 |||||||||| || || ||||| |||||||| | ||||| | ||| || || | Sbjct 43486043 CTGCATCTCCGATGAGTCTCTCTGTGTCTGTAAAGGCCACATA-GCTGGGCGTGGTCGGT 43485985 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851 | || || || || || ||||| || ||||| |||| || | || || ||||| Sbjct 43485984 TGCCCTGGTCGTTGGCGATAATCTCCACTTTGCCATGCTGGAACACCCCCACACAGGAGT 43485925 Query 282852 AAGTTGTTCCTAAATCAATACCAATAG 282878 | || || |||| |||||| ||||||| Sbjct 43485924 AGGTGGTGCCTAGATCAATGCCAATAG 43485898 >seq7 Length=46052510 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || |||| Sbjct 27913219 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGAACA 27913278 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||| ||| |||| || ||||| || ||||| | ||| || ||||| || || Sbjct 27913279 TTCAGACCAGAGATTGTTCCAGCGTCTTTGGTTGCTTGCCGTTGAGAGTCGTTGAAGTAA 27913338 Query 282452 GCAGGAACAGTAATAACGGC 282471 || || || || | ||| || Sbjct 27913339 GCTGGCACTGTTACAACAGC 27913358 >seq1 Length=40371802 Score = 95.1 bits (104), Expect = 9e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || || |||||||| | || |||| | ||||| ||||| |||||||| Sbjct 22275367 CAAACACTGTGTTTGTTGGATTCATGGCCACTTGGTTCTTGGCAGCATCCCCAATCAGCC 22275426 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| |||||||||| || || || || || | ||||| || || || |||| Sbjct 22275427 TCTCTGTGTCTGTAAATGCTACGTAGCTGGGTGTGGTCCTGTTACCCTGGTCGTTGGCAA 22275486 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| |||||||||| || | ||||||||||| | || || || || |||| Sbjct 22275487 TGATTTCCACTTTACCATGCTGGAACACACCTACACAGGAGTAGGTGGTGCCCAAGTCAA 22275546 Query 282870 TACCAATAGC 282879 | |||| ||| Sbjct 22275547 TGCCAACAGC 22275556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740580371406294