Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq24 104 3e-17 seq11 98.7 1e-15 seq3 98.7 1e-15 >seq24 Length=22381654 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 || ||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 7424738 CCTAGTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 7424797 Query 11784 GATTCCCCGACGAGGAGGGAGGTT 11807 ||||||||||| ||||| | ||| Sbjct 7424798 AATTCCCCGACGGGGAGGTATGTT 7424821 Score = 102 bits (112), Expect = 1e-16 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11719 GTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCG 11777 |||| | |||||||||||||||||||||| ||||| |||| ||||| | |||||||||| Sbjct 7430460 GTGTTATTCAGTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCG 7430519 Query 11778 GGGTTCGATTCCCCGACGAGGAG 11800 |||||| ||||||||||| |||| Sbjct 7430520 GGGTTCAATTCCCCGACGGGGAG 7430542 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| | Sbjct 7424740 TAGTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 7424799 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 7424800 TTCCCCGACGGGGAG 7424814 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 |||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| | Sbjct 7433037 CAGTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 7433096 Query 11786 TTCCCCGACGAGGAG 11800 |||||||||| |||| Sbjct 7433097 TTCCCCGACGGGGAG 7433111 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 7459828 AGTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 7459769 Query 11787 TCCCCGACGAGGAGG 11801 ||||||||| ||||| Sbjct 7459768 TCCCCGACGGGGAGG 7459754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 7430471 TCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 7430530 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7430531 CCCGACGGGGAG 7430542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 7433040 TCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 7433099 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7433100 CCCGACGGGGAG 7433111 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 7459826 TCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 7459767 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7459766 CCCGACGGGGAG 7459755 Score = 98.7 bits (108), Expect = 1e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 7461975 GTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 7461916 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 7461915 CCCCGACGGGGAGG 7461902 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 7461974 TCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 7461915 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7461914 CCCGACGGGGAG 7461903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| ||||||||| | |||||||||||||||| | |||| |||||||| | |||||| Sbjct 7433112 ACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 7433053 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 7433052 ATACTAACGAGGA 7433040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7459755 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7459814 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 7459815 TACTAACGAGGACTT 7459829 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7424814 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7424755 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7424754 TACTAACGAGGA 7424743 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7430542 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7430483 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7430482 TACTAACGAGGA 7430471 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7461903 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7461962 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7461963 TACTAACGAGGA 7461974 >seq11 Length=44859740 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 43472617 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 43472676 Query 11789 CCCGACGAGGAGGGAGGTTAA 11809 ||||||| |||| | || ||| Sbjct 43472677 CCCGACGGGGAGAGCGGGTAA 43472697 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 43472617 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 43472676 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 43472677 CCCGACGGGGAG 43472688 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||| ||||||||| |||||||||| ||||| | ||||||||||||||| |||| Sbjct 43468856 TCCTCGTTAATATAGTGGTGAGTATTCCCGACTGTCACGCGGGAGACCGGGGTTTAATTC 43468915 Query 8718 CCCGACGAGGAG 8729 |||||| |||| Sbjct 43468916 CCCGACAGGGAG 43468927 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 43472688 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 43472629 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 43472628 TACTAACGAGGA 43472617 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||| ||||||||| ||||| |||| ||||| | ||||||||||||||| |||| Sbjct 43468856 TCCTCGTTAATATAGTGGTGAGTATTCCCGACTGTCACGCGGGAGACCGGGGTTTAATTC 43468915 Query 11789 CCCGACGAGGAG 11800 |||||| |||| Sbjct 43468916 CCCGACAGGGAG 43468927 >seq3 Length=29826154 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 11726 CCAG-TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 6454276 CCAGCTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 6454217 Query 11784 GATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 6454216 AATTCCCCGACGGGGAGG 6454199 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 6454271 TCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 6454212 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 6454211 CCCGACGGGGAG 6454200 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 6454200 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 6454259 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 6454260 TACTAACGAGGA 6454271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652836484389360