Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13 143 4e-28 seq6 109 8e-18 >seq13 Length=36369518 Score = 143 bits (158), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| |||||| |||| |||| || |||| ||||| Sbjct 54476 TACAAAGTCCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 54529 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||| | ||| |||||||| | || ||||||| | |||| || |||| Sbjct 54530 GGGATCATGAACTCTTCTGTGAACGACATCTTTGAGCGCATCGCCGGCGAGTCCTCTCGC 54589 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||| | || ||| | | ||||||||||| ||||||||| Sbjct 54590 CTGGCCCACTACAACAAGAGGTCTACCATCACGTCCAGGGAGATCCAGACGGCCGTGCGC 54649 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | | | |||||| ||||||| |||||||| ||||||||||||| Sbjct 54650 CTGCTGCTTCCCGGCGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 54698 >seq6 Length=28932462 Score = 109 bits (120), Expect = 8e-18 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| ||||| |||| | |||||||| || ||||| Sbjct 10407598 TACAAAGTCCTGAAGCAGGTTCACCCGGACACCGGTATC---TCCTCCAA--AG-CCATG 10407651 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| || |||| ||| | ||| Sbjct 10407652 GGAATCATGAACTCATTCGTGAACGACATCTTCGAACGTATCGCGGGGGAGTCATCTCGT 10407711 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| || ||| | || | ||||| |||||||||||||| Sbjct 10407712 CTGGCCCACTACAACAAGCGATCTACCATCACCTCGAGAGAGATTCAGACCGCCGTGCGG 10407771 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | | | ||| || ||||||| || ||||| |||||||| || Sbjct 10407772 CTGCTGCTCCCCGGTGAGCTGGCCAAACATGCCGTGTCCGAGGGGAC 10407818 Score = 100 bits (110), Expect = 4e-15 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||| ||||| |||| |||| | | ||| ||||| Sbjct 10405134 TACAAAGTCCTGAAGCAGGTTCACCCGGACACCGG-----CATCTCCTCAAAAG-CCATG 10405081 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || ||||| || |||| || |||| ||| | ||| Sbjct 10405080 GGAATCATGAACTCGTTCGTGAACGATATATTCGAACGTATCGCGGGGGAGTCATCTCGT 10405021 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| || || || | ||||||||||||||||| || Sbjct 10405020 CTGGCCCACTACAACAAGCGATCTACCATTACTTCGAGAGAGATCCAGACCGCCGTCCGG 10404961 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | | | ||| |||||||||| || ||||| ||||| ||||| Sbjct 10404960 CTGCTGCTCCCCGGAGAACTGGCCAAACATGCCGTGTCCGAAGGCAC 10404914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177712915577078