Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7 172 6e-38 seq14 159 4e-34 seq10 91.5 2e-13 >seq7 Length=46052510 Score = 172 bits (190), Expect = 6e-38 Identities = 165/210 (79%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| || | Sbjct 22020061 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020120 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTC-AGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| ||||||| || || | ||||||||||||| ||||| |||||||| Sbjct 22020121 GACACCATTGAGAATGTGAAGGCCAAGATGCCAGGACAAGGAGGGCATTCCCCCAGACCA 22020180 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 22020181 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAA 22020240 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| || |||||||| |||||||| || Sbjct 22020241 CATCCAGAAAGAATCCACCCTTCATCTGGT 22020270 Score = 161 bits (178), Expect = 1e-34 Identities = 162/209 (78%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| || | Sbjct 22020290 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020349 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || |||||||||||||| || || ||||||||| Sbjct 22020350 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 22020409 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 22020410 CAGCGTCTGATCTTTGC-GGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAAC 22020468 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| || || ||||| ||||| || || Sbjct 22020469 ATCCAGAAAGAGTCCACCCTTCACCTGGT 22020497 Score = 159 bits (176), Expect = 4e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || | ||| || || |||||||| || || || ||||| ||| || | Sbjct 22020745 ATGCAGATCTTCGTGA-GACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020803 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC-CA 27524 || | ||||| ||| ||||||| || || |||||||||||||| || || |||||| || Sbjct 22020804 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACGCA 22020863 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 22020864 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAA 22020923 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| || |||||||| |||||||| || Sbjct 22020924 CATCCAGAAAGAATCCACCCTTCATCTGGT 22020953 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| || | Sbjct 22020517 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020576 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA-CCA 27524 || | ||||| ||| ||||||| || || |||||||||||||| || || ||||| ||| Sbjct 22020577 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCCA 22020636 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || ||||| || ||||| || || |||| || ||| | ||||| || Sbjct 22020637 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTCTTCCGACTACAA 22020696 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| || |||||||| | |||||| || Sbjct 22020697 CATCCAGAAAGAATCCAC-CCTCATCTGGT 22020725 Score = 141 bits (156), Expect = 1e-28 Identities = 174/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||| ||| || || || ||||| ||| || | Sbjct 22020973 ATGCAGATCTTCGTGAAGACCCTCACAGGCA-GACCATCACCCTCGAGGTCGAGCCAAGC 22021031 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT-CCTCCAGACCA 27524 || | ||||| ||| ||||||| || || |||||||||||||| ||| || ||||| || Sbjct 22021032 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCAGA-CA 22021090 Query 27525 GCAGCGTCTAAT-TTTTGCTGGTAAGCAACTCGAGGAT-GATCGTACCCTAGCAGACTAT 27582 ||||||||| || ||| || || ||||| || || ||| | || ||||| | ||||| Sbjct 22021091 GCAGCGTCTGATCTTTGGCCGGCAAGCAGCT-GAAGATGGCCCGCACCCTTTCCGACTAC 22021149 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| || |||||||| |||||||| || | || || | ||||| Sbjct 22021150 AACATCCAGAAAGAATCCACCCTTCATCTGGTGCTCCGACTCAGGGGTGG 22021199 >seq14 Length=34043612 Score = 159 bits (176), Expect = 4e-34 Identities = 168/219 (77%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 21659978 ATGCAGATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 21660037 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| ||||| |||||||||||||| || || ||||||||| Sbjct 21660038 GACACCATCGAGAATGTCAAGC--AAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 21660095 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| ||| ||||| | ||||| || Sbjct 21660096 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAC 21660155 Query 27586 GTCCAAAAGGAAT-CCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| | |||| ||||| || || | ||||| Sbjct 21660156 ATCCAGAAGGAGTCCCACCCTTCACCTGGTGCTCCGTCT 21660194 Score = 154 bits (170), Expect = 2e-32 Identities = 168/219 (77%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || || ||||||||| | || Sbjct 21660430 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCT-GAGGTTGAGCCCAGT 21660488 Query 27466 GATAGCATTGCAAATTTGAA-GGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | || ||| || || |||||||||||||| || || |||||||| Sbjct 21660489 GACACCATCGAGAATGTCAAAGGCCAAGATCCAGGACAAGGAGGGCATCCC-CCAGACCA 21660547 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || || |||| ||| ||||| | ||||| || Sbjct 21660548 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAA 21660607 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| ||||| || || | ||||| Sbjct 21660608 CATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCT 21660646 Score = 149 bits (164), Expect = 7e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || || |||| |||| | || Sbjct 21660657 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCTGGAGGGTGAGCCCAGT 21660716 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||| |||||||||| || || ||||||||| Sbjct 21660717 GACACCATCGAGAATGTCAAGGCAAAGATCCAG-ACAAGGAGGGCATCCCCCCAGACCAG 21660775 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA-TAA 27584 |||||||| || || || || ||||| || || |||| ||| ||||| | ||||| || Sbjct 21660776 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAA 21660835 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| ||||| || || | ||||| Sbjct 21660836 CATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCT 21660874 Score = 145 bits (160), Expect = 9e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || || ||||||||| | || Sbjct 21660202 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCT-GAGGTTGAGCCCAGT 21660260 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||| || || || ||||||||| Sbjct 21660261 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGGAGGCATCCCCCCAGACCAG 21660320 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCG-AGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || || || || || || || | | |||| ||| ||||| | ||||| || Sbjct 21660321 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAAGATGGTCGCACCCTCTCCGACTACAA 21660380 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| ||||| || || | ||||| Sbjct 21660381 CATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGTCT 21660419 >seq10 Length=26897606 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || || || ||| | || ||||||||||| || || ||| ||||| | || |||| Sbjct 13376216 ACGATCGTGAACTTGGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCCG 13376157 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 || |||||||| ||||| || |||||||||||| ||||| ||| ||||||||||| Sbjct 13376156 CTGGGCCAGTTTGGCACCCGCATCAACGGTGGCAAGGACGCTGCCAGCCCCCGTTACATC 13376097 Query 32245 TTCAC 32249 ||||| Sbjct 13376096 TTCAC 13376092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303135671280