Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7 109 4e-19 seq14 87.8 1e-12 >seq7 Length=46052510 Score = 109 bits (120), Expect = 4e-19 Identities = 148/203 (73%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || |||||||| || || || ||||| ||||| || || | Sbjct 22020058 AAGATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCA 22020117 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCT--GACAAAGAAGGTGTACCGCCA 23724 | ||||| |||| ||| | || | || | ||| ||||| || || | || ||| Sbjct 22020118 AGCGACACCATTGAGAATGTGAAGGCCAAGA--TGCCAGGACAAGGAGGGCATTCCCCCA 22020175 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || |||||| | || ||||||||||| || |||||||| | ||||| | ||| Sbjct 22020176 GACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGAC 22020235 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || ||||| ||||| Sbjct 22020236 TACAACATCCAGAAAGAATCCAC 22020258 Score = 104 bits (114), Expect = 2e-17 Identities = 144/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || | | Sbjct 22020290 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020349 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 22020350 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 22020408 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || |||||||| | ||||| | ||| ||||| Sbjct 22020409 GCAGCGTCTGATCTTTGC-GGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACAA 22020467 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 22020468 CATCCAGAAAGAGTCCAC 22020485 Score = 100 bits (110), Expect = 2e-16 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || | | Sbjct 22020517 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020576 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| | Sbjct 22020577 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCC 22020635 Query 23730 A-CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || ||||||||||| || |||||||| | ||||| | ||| |||| Sbjct 22020636 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTCTTCCGACTACA 22020695 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||| ||||| Sbjct 22020696 ACATCCAGAAAGAATCCAC 22020714 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| | | ||||||| || || || ||||| ||||| || || | | Sbjct 22020745 ATGCAGATCTTCGTGAGA-CCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCAAGC 22020803 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT-C 23728 ||||| |||| ||| | || | || | | ||||| || || | || ||||| | Sbjct 22020804 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACGC 22020862 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || ||||||||||| || |||||||| | ||||| | ||| |||| Sbjct 22020863 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCCGACTACA 22020922 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||| ||||| Sbjct 22020923 ACATCCAGAAAGAATCCAC 22020941 >seq14 Length=34043612 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || ||||| ||| Sbjct 21660202 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACCCT-GAGGTTGAGCCCAGT 21660260 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| | ||| | || ||||| || Sbjct 21660261 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGGAGGCATCCCCCCAGACCA 21660319 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGG-AAGACGAACGCACTTTAGGCGATTACA 23788 |||||| | || || ||||||||||| |||| |||| | ||||| | ||| |||| Sbjct 21660320 GCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAAGATGGTCGCACCCTCTCCGACTACA 21660379 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 21660380 ACATCCAGAAGGAGTCCAC 21660398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005402237652