Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1019 127 5e-24 seq14 122 2e-22 seq7 118 3e-21 >seq1019 Length=16695 Score = 127 bits (140), Expect = 5e-24 Identities = 133/175 (76%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || ||||| |||| || |||||||||||||| || || ||| | ||||| || | Sbjct 5597 TTTATAATGTTATCGTTACAGCCCATGCCTTTGTTATAATCTTTTTTATAGTTATACCCG 5656 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| || || ||||| ||||| ||||| |||| ||||||||||||| || || |||| Sbjct 5657 TTATAATTGGGGGTTTTGGAAACTGATTAATTCCCCTAATGATTGGTGCCCCCGACATGG 5716 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 | || || | | || |||||||| || ||| | || || || ||||| || || Sbjct 5717 CCTTCCCCCGCATAAATAATATAAGCTTCTGACTTCTCCCCCCCTCCTTTTTACT 5771 >seq14 Length=34043612 Score = 122 bits (134), Expect = 2e-22 Identities = 158/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGG-ATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || || ||||| || |||| | || || |||| ||||| |||| | || | ||||| Sbjct 21660188 AGCACCAGGTGAAGGGTGGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATC 21660129 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 21660128 TTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 21660069 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||||||| ||| ||||||||||| || || || || | ||||| || Sbjct 21660068 CTGGAT--TTTGCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 21660011 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || |||| || | ||||| || Sbjct 21660010 CTTGCCAGTCAGGGTCTTTACAAAGATCTGCATCTT 21659975 Score = 107 bits (118), Expect = 5e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATT-GTAATCGGCCAAAGTTCTCCCATC 225560 || || ||||| || ||||| || || |||| || ||| |||| | || | ||||| Sbjct 21660868 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTTGTAGTCGGAGAGGGTGCGACCATC 21660809 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 21660808 TTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 21660749 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 | |||||||| ||| ||| ||||||||||| || || | || | ||||| || Sbjct 21660748 T-GGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCACCCTCCAGGGTGATGGT 21660690 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 21660689 CTTACCAGTCA 21660679 Score = 104 bits (114), Expect = 6e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| ||||| |||| | || | |||||| Sbjct 21660413 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 21660354 Query 225562 T-CTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 | | ||||| || || |||||||| || || || ||||| || || || ||| ||||||| Sbjct 21660353 TTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCTCCCTTGTC 21660294 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 21660293 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTC-AGGGTGATGGT 21660235 Query 225681 CTTGCCCGTCA 225691 ||| || |||| Sbjct 21660234 CTTACCAGTCA 21660224 >seq7 Length=46052510 Score = 118 bits (130), Expect = 3e-21 Identities = 160/222 (72%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || || || || || ||||||||||| |||| ||||| |||| | || | Sbjct 22020279 AGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGG 22020220 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| || || ||||| || || || ||||| || ||||| || ||| Sbjct 22020219 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCC 22020160 Query 225616 TTGTCTTGG-ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||| ||| ||||| ||||||| || |||||||| | || || || | || Sbjct 22020159 TTGTCCTGGCATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGT 22020100 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| |||||||| || | || || | ||| | ||||| || Sbjct 22020099 GATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATCTT 22020058 Score = 109 bits (120), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 225513 GAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTT 225572 ||| ||||||||||| |||| ||||| |||| | || | |||||||| |||||||| Sbjct 22020718 GAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAAGAGGTGCGGCCATCTTCCAGCTGCTT 22020659 Query 225573 CCCAGCGAAGATAAGTCGTTG-TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTT 225631 || || ||||| || || || | |||| || || || || |||||||| |||||||| Sbjct 22020658 GCCGGCAAAGATCAGACGCTGCTGGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGG 22020599 Query 225632 GCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 ||||||| || |||||||| | || || || | ||||| |||||||| || | Sbjct 22020598 CCTTCACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGA 22020539 Query 225692 AAGTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 22020538 GGGTCTTCACGAAGATCTGCAT 22020517 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||| || || || || || ||||||||||| |||| ||||| |||| | || | Sbjct 22020962 AGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGG 22020903 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTG-GTCGGGCGGAATACCTTC 225614 |||||||| |||||||| || || ||||| || || || || ||| || || || || || Sbjct 22020902 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGCGTCTGGGGGGATGCCCTC 22020843 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| |||||||| ||||||| || |||||||| | || || || | || Sbjct 22020842 CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGGT 22020783 Query 225675 GATCGTCTTGCCCGT 225689 ||| |||||||| || Sbjct 22020782 GATGGTCTTGCCTGT 22020768 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC-T 225554 |||| || || || || || ||||||||||| |||| ||||| |||| | || | Sbjct 22021190 AGTCGGAGCACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGG 22021131 Query 225555 CCCATCTTCTAGCTGCTTCCCAG-CGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| |||||||| || | | ||||| || || || || ||| ||||| || | Sbjct 22021130 GCCATCTTC-AGCTGCTTGCCGGCCAAAGATCAGACGCTGCTGTCTGGGGGGAATGCCCT 22021072 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||||||| |||||||| ||||||| || |||||||| | || || || | | Sbjct 22021071 CCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCGACCTCGAGGG 22021012 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||| |||| || | || || | ||| | ||||| Sbjct 22021011 TGATGGTC-TGCCTGTGAGGGTCTTCACGAAGATCTGCAT 22020973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192515630387186