Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Esox_20lucius_20[refseq_20GCF_5F000721915.3_202017-01-18] 1,019 sequences; 904,497,253 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq8 131 2e-25 seq3 122 1e-22 seq13 111 2e-19 >seq8 Length=32939842 Score = 131 bits (144), Expect = 2e-25 Identities = 195/277 (70%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||||||||| | || || || ||| | | ||| | ||||| || || || Sbjct 30960270 CCCTTGACGTTGTTGCATACCAGCCTCTGTAGGGATGCAGTGTTGACAATGTTAAAGCCA 30960211 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || || ||||||||||||||||||||| | || ||||| || || |||| Sbjct 30960210 ACACTCCCACCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATAGGATTTCCCATC 30960151 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 |||||||| |||||| | || || |||| ||| | ||| |||| || || ||| | ||| Sbjct 30960150 AGGCCTTTAAGGGAGTAGGGTGCACCCATCTCTACCATGGTCTCCCCAAATATGCCATTG 30960091 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | | |||||| ||||||| || || | ||| ||||||||||| || || | || || Sbjct 30960090 GTTCTGGGCTTCTCCACCAGCAAACCTGGGTAGAGCTCCACAGCATCCACATGGCCATAC 30960031 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || | | ||||| ||||||||||| |||| Sbjct 30960030 ATCTCCTCCAACACTGCAGCCATCTCCTTTTCCCCTG 30959994 Score = 109 bits (120), Expect = 8e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||| ||||| |||| ||||| || || || ||| ||| || || || | Sbjct 30958143 CCAATAAGAATGAGGCGAGATGTCTGAAAGAGCCTATCATCATCCCAGTCCGGGTGGACC 30958084 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | |||| ||||| || || | ||| ||||| || |||||||| || || ||||||||| Sbjct 30958083 TCCTTCAAGACATCACAAACGCGGTTATGTTCTCTTAGCCAGATGGTAGCATACATCATG 30958024 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || ||||| ||||||||||| ||||| || || ||||| | || ||| || || Sbjct 30958023 AGACCAGGAACCAGGCCAAAGGCCTCATGGCCCACAGCGAATCGTTGAGATTCTGGAACA 30957964 Query 9415 TCGGGAGGATAGATCATGTGCAC 9437 | |||||||||| ||||| ||| Sbjct 30957963 TGGGGAGGATAGTGCATGTCCAC 30957941 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | ||| |||||||| || | ||| | ||||| || | | || | Sbjct 30957070 TCACCTACGACTCCCATAGGGGTTGGACAGTCCTTAGGCAAAGGAGGGAGGGTGCGTGTG 30957011 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| ||||| |||||||||||||| || || ||||| || ||| | | Sbjct 30957010 TAGTAGGAGAGGTTGGAATAAGCTTCCCAGCTTTTATAATCATAGTCTGCATTGAAGGTT 30956951 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTG 10058 ||||||||||| |||| || ||| | | ||| Sbjct 30956950 GGAGGGCTGTCTATCATATGGGAGCGAGCTG 30956920 >seq3 Length=29826154 Score = 122 bits (134), Expect = 1e-22 Identities = 222/325 (68%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || || || ||||||||||| | | ||||| ||| || ||||| ||| | ||||| Sbjct 6420821 ATCAGGCGCGTGGTCTGGAAGATGCGTTCGTCGTCCCAGTCGGGATGCTCTCGCTTCAGG 6420880 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || || || | |||||| ||||| ||||| || ||||| |||||||||||||| || Sbjct 6420881 ACGTCACAGACGCGGTTGTGCTCCCTCAGCCATATGGTGGCATACATCATGAGCCCTGGG 6420940 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 | ||||||||| ||| || || || |||| || | || | ||| | ||| || Sbjct 6420941 AGGAGGCCAAAATGCTCGTGGCCCACGGCCAAGCGGTGCTCCTCTGCCACATGGGGCGGG 6421000 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || ||| || ||| || || ||||| || || || | || || | | | | Sbjct 6421001 TAATGCATCTGGACCCCCACCTCCCGTACCGACGGAGGGTAGACCTCCCCATTCACCTCC 6421060 Query 9484 TGATACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCGTCTCT 9543 || ||||||| || ||||| ||||| || | ||| || ||| | || | || ||| Sbjct 6421061 TGGTACTTCAGCTTGCCGTCCTTGAACAGCCTCAGTTTGTGCTGCCTCTCCAGAGTGTCT 6421120 Query 9544 CCATAGATGTGGTTGAGATCCACCT 9568 || || | ||||| | ||||||| Sbjct 6421121 CCGTACACATGGTTCAAGTCCACCT 6421145 Score = 102 bits (112), Expect = 1e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || | || ||||| || || || ||||| ||| ||||||| | || ||| Sbjct 6418935 TTGACAATGTCAAAGCCCACACTCCCTCCAAATGTGCTTGGCATCCAGTATTCTGGAGAG 6418994 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || ||| ||| ||||||| ||||| || ||| | || | |||| ||| | ||| || Sbjct 6418995 CAAATGGGGTTTCCCATGAGACCTTTCAGAGAGTAAGGGGAGCCCATCTCAACAATAGTC 6419054 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||| || ||||| | | |||| || |||| | || | ||||| || | | Sbjct 6419055 TCCCCGAAAATTGCGTTATGTCTGGGCCGCTCAACCAGAAGGCCTGGATACAGTTCTAGA 6419114 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || ||||||||||| ||| | || || || || ||||| |||||||| Sbjct 6419115 GCATCCACGTCTCCGTACAGGTTCTCCAGCTCTGCTGCCATCTCGGTTTCTCCT 6419168 >seq13 Length=36369518 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || |||||||||||||||||| | ||||| ||||| ||| | | |||||| Sbjct 9278489 CCACCAAACGTGCTGGGCTTCCAGTACTCAGGGGAACAGATTGGGTTACCTAGAAGGCCT 9278430 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || |||||||||||||| |||| || | ||||||||||| || ||||| | | | || Sbjct 9278429 TTCAGGGAGAACGGAGCTCCCATTTCCACCATGCTCTCACCAAATATGGCTTGGTGGCGT 9278370 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | ||| |||| || || ||| ||| | ||||| || || | ||| || || || Sbjct 9278369 GTCTTCTCCAGCATGAGGGCGGGGTAGAACTCCAGCGCATCTATGTCACCATAGAG 9278314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716867668781760