Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq348 87.8 2e-12 >seq348 Length=361584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || |||| ||||||||| |||| |||| Sbjct 109440 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 109499 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | | ||| || || ||||||||||| || || ||||| || ||||| |||| Sbjct 109500 TCAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAGATGCCCTCCACGG 109550 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| || ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 110515 ATGTAGGTGTCGATCAGCAGGCTGTACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 110574 Query 17294 AATCCGTAAAAGCATCGGGCTTCCG 17318 || ||||| || || | ||| |||| Sbjct 110575 AACCCGTAGAAACACCTGGCCTCCG 110599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517479742322400