Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10130 277 2e-69 >seq10130 Length=961328 Score = 277 bits (306), Expect = 2e-69 Identities = 822/1260 (65%), Gaps = 6/1260 (0%) Strand=Plus/Minus Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||| ||||| || || || ||||||||||| || | || || || || ||||| ||| Sbjct 295689 CTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTT 295630 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 || || ||||| || || ||| | ||||| || || || |||| || || || || || Sbjct 295629 GCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGC 295570 Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT 53940 | ||| | | ||||| | | || | | || ||||| ||| Sbjct 295569 GTACCACAGCTGCTGGGCCTTCACCACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGT 295510 Query 53941 ATACAATCGT-TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 53999 || | ||| || ||||| || ||||| | ||||| || ||||| || |||| Sbjct 295509 GTAGAG-CGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGAC 295451 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 |||||| ||||| || || || ||| || |||| || || || || ||||| | Sbjct 295450 ACATCAGGGACCAGTCCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACA 295391 Query 54060 GAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 54118 | || || || || || |||| | || ||||| || || || ||||| || || || Sbjct 295390 G-GCCGTAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCC 295332 Query 54119 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGT 54178 ||||| | | | || | |||||||| |||| ||| |||| | | || |||| Sbjct 295331 AGGAAGTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTC 295272 Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 ||||| || ||||| || | ||| | |||||||| || || || | || ||| || | Sbjct 295271 TTGTTGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACC 295212 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298 | || ||||| || ||||| |||| ||| ||||| || | | || || || Sbjct 295211 AGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGCAGCTC 295152 Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358 | | | || || || || ||| || ||||| | ||||| | || | ||| || Sbjct 295151 ACCGCCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCG 295092 Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418 ||||||||||| || || || ||| ||||| || || || ||||| |||| || | Sbjct 295091 TAGATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGC 295032 Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 54478 || | || || || || || | || || || |||||||| ||||| || || || || Sbjct 295031 CGGTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGC 294972 Query 54479 AGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 54538 || |||||||||||||| || | ||| || |||| || || || || | || ||| Sbjct 294971 AGGTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACACGCGC 294912 Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598 || | ||||||||| || | || | | ||| ||| || ||||||| |||||| Sbjct 294911 ATGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCGC 294852 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 |||| || || || || || ||||||| || ||||| || ||| | || || | ||| Sbjct 294851 TCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTCGCGGTCGAAGATGATGGCGGAG 294792 Query 54659 TTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGA 54717 ||||| ||||| | | || | |||| || | ||| || | || || || Sbjct 294791 TTGAGGCGGTCCTTGTTCTCCAGGACGATGTCCAGCGT-CTCCTTGGAGACCATGGGGGA 294733 Query 54718 ATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAG 54777 || || || || ||||| ||||| | | |||| |||||| || || || | Sbjct 294732 GTGGCGGCCGTTCAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACAC 294673 Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 || || || || ||||| | || || ||||| || || ||||| || ||||| || || Sbjct 294672 CTTCTTGGTCTCCTTGTGGATGTTGGAGACGGCGATCCTGGCGGCGAGGATGGCGTAGTC 294613 Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 || || | || || ||||| || || || || | || ||||||| || || || Sbjct 294612 GGGGTGCTTGGTGGTGAGGGTGGCCGCGATCTCTGCGGCGAGCGTGTCCAGCTCCACGGT 294553 Query 54898 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATG 54957 || || || | || | || ||||| |||||||| | || | | || || | Sbjct 294552 GGTGACGCCGCTGTACAGGCCCTGGATCACCTTCATGGTGATCTGCGTCGGGTCCACGAA 294493 Query 54958 ATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 55017 || | ||| | ||| || || | || || || || ||||||||||| |||||||| Sbjct 294492 GTCCGCGTTCAGGCCGTAGCACAGCTTCTGTATGCGGGACGTGATTTTATCGAACATGAC 294433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593646048926400