Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq297 176 5e-39 >seq297 Length=3848896 Score = 176 bits (194), Expect = 5e-39 Identities = 149/181 (82%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || || | ||| |||| ||||||||| || |||| |||||||| ||||| || Sbjct 2866603 CTGGAGTCCTGTAATGTGTGCGATCATGTAGGTGAGAAGGGCATAGCTGGCGATGTTAAA 2866544 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||||||||| |||||||| | ||||||||||||||||| ||||| ||||||||| | Sbjct 2866543 AGGCACCCCCAGGCCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTC 2866484 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG-GCGGGCAGGTCCG 145924 |||||||||||||| ||| ||||||||| |||||||||||| ||||| ||||| | Sbjct 2866483 GCAGACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGGGCCATGAGCGGG-AGGTCTG 2866425 Query 145925 C 145925 | Sbjct 2866424 C 2866424 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/149 (74%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 ||| | || || ||||||||||||||||| ||||| || || ||||||||||| ||| Sbjct 2862385 TACTCTGCGCCAAAGTGCCTCCACTGGAAGCCGTACACAGGTCCCAGGTCCCCCTCCTCT 2862326 Query 146101 CTGTGCCCCAGCCCGGCCCGGG----CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGAT 146156 || | | | |||| || | |||||| | |||||||||||||| |||||||| Sbjct 2862325 CTCT----CTGTGAAGCCCAGGTTGTCCAGGAAGGCGCGGGACCCGTTGGCATCCCAGAT 2862270 Query 146157 CTTGACGCCCCTCGCGGAGAGCTCATTGG 146185 ||| ||||| || | || ||||| |||| Sbjct 2862269 CTTCACGCCTTTCTCTGACAGCTCCTTGG 2862241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590001712727200