Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq9876 141 1e-28 seq2240 141 1e-28 seq10114 87.8 2e-12 >seq9876 Length=2892554 Score = 141 bits (156), Expect = 1e-28 Identities = 195/271 (72%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||| | || |||| ||||||||| |||||||||| ||||||||| | || ||| || Sbjct 1131103 CCGTCCGGCCCAACCAGGAACTTCTCAAAGTTCCAGGACACGTCGTTCCTGCTCACCGGG 1131162 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245 ||| || |||| ||||||| ||| || | ||||||||| || ||| Sbjct 1131163 CTCCACATGATCAGCTTGGGGTCGTTCATCAGGGACGAGGGGTCGTCGCTGGGGAAGGGC 1131222 Query 83246 AGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACT 83303 || |||| ||||| | || || ||||| || |||| | ||||||| || || Sbjct 1131223 AGCTTCTCTTTAAGGAACACAAACAGGGGATGGGCGTCCTTCC--CGTTGACGTCCACCT 1131280 Query 83304 TCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAG 83363 |||| | |||| ||| || |||||||||||||| || |||||||||||||||||||| Sbjct 1131281 TCTCCAGGAGCTGAAACTTGGGCTCGAAGCCGTTTCCGGGACGGACGTGCTTCAGGGACA 1131340 Query 83364 GCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | | |||||| | |||| | ||| ||||| Sbjct 1131341 GGAGGATCTCCTCGTTCTTGCAGTTCTCCTG 1131371 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || || | || || || || |||||| | | | | Sbjct 1131908 CCTGGTGGCCGAACTGGTTGCAGGGTACTCCCAGGACGACGAGCCCCTGGCCGGCGTACC 1131967 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || || |||||||||||||| ||||| |||| ||| || | |||||||| ||||| | Sbjct 1131968 GCTCGTGGAGCTCGTTCATCTGGGTGTAATCCCTGACGGTCGTGCCTCAGAGAGACGCGA 1132027 Query 83511 CGTTCTCGATGAGCAAGAC 83529 | ||||| ||||| | ||| Sbjct 1132028 CATTCTCAATGAGGACGAC 1132046 >seq2240 Length=16216 Score = 141 bits (156), Expect = 1e-28 Identities = 195/271 (72%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||| | || |||| ||||||||| |||||||||| ||||||||| | || ||| || Sbjct 4494 CCGTCCGGCCCAACCAGGAACTTCTCAAAGTTCCAGGACACGTCGTTCCTGCTCACCGGG 4435 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245 ||| || |||| ||||||| ||| || | ||||||||| || ||| Sbjct 4434 CTCCACATGATCAGCTTGGGGTCGTTCATCAGGGACGAGGGGTCGTCGCTGGGGAAGGGC 4375 Query 83246 AGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACT 83303 || |||| ||||| | || || ||||| || |||| | ||||||| || || Sbjct 4374 AGCTTCTCTTTAAGGAACACAAACAGGGGATGGGCGTCCTTCC--CGTTGACGTCCACCT 4317 Query 83304 TCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAG 83363 |||| | |||| ||| || |||||||||||||| || |||||||||||||||||||| Sbjct 4316 TCTCCAGGAGCTGAAACTTGGGCTCGAAGCCGTTTCCGGGACGGACGTGCTTCAGGGACA 4257 Query 83364 GCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | | |||||| | |||| | ||| ||||| Sbjct 4256 GGAGGATCTCCTCGTTCTTGCAGTTCTCCTG 4226 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || || | || || || || |||||| | | | | Sbjct 3689 CCTGGTGGCCGAACTGGTTGCAGGGTACTCCCAGGACGACGAGCCCCTGGCCGGCGTACC 3630 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || || |||||||||||||| ||||| |||| ||| || | |||||||| ||||| | Sbjct 3629 GCTCGTGGAGCTCGTTCATCTGGGTGTAATCCCTGACGGTCGTGCCTCAGAGAGACGCGA 3570 Query 83511 CGTTCTCGATGAGCAAGAC 83529 | ||||| ||||| | ||| Sbjct 3569 CATTCTCAATGAGGACGAC 3551 >seq10114 Length=998419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||||||||||||||| ||||| | || || ||| ||| | | || | Sbjct 728264 GAACTTCTCGAAGTTCCAGGAGACGTCCGCCCTGCTGACCGGACTCCAAACCAGGAATTT 728205 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGG--GCCTCTCGTAGG 83260 ||| || || ||| | ||| |||||| || || || || | || || Sbjct 728204 GGGATCTTGCATGAGGGAGCTGGGGTCGTCTTCGGGGAAGGGGAGTTTGCTTTTC--AGA 728147 Query 83261 AAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 |||| |||| || |||| |||| |||||||| |||||||||||||| | | ||| Sbjct 728146 TAGGCAAAGACTGGGTGTGTGTTTGCTCCGTTGACGTCGCACTTCTCGAACATGGTGAAG 728087 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATT 83379 || |||| ||||||| || || || ||||||| ||| ||| ||| |||||| |||| Sbjct 728086 TTGGGCTTGAAGCCGCCGCCTGGTCGCACGTGCTGCAGTGAATGCAGAATCTCGCCATT 728028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608719330607200