Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq9955 131 1e-25 seq483 131 1e-25 >seq9955 Length=1786201 Score = 131 bits (144), Expect = 1e-25 Identities = 158/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||| | ||||| | |||||| || | || |||||||||||||| Sbjct 4101 GTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 4160 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| |||||||| |||||| |||| Sbjct 4161 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTC 4220 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| |||| ||| ||||||||||| || | || Sbjct 4221 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 4280 Query 21159 TTGACAAATATTTGCATTTTGAATCTCTTATAAA 21192 |||||||| |||||||| |||| || | ||||| Sbjct 4281 TTGACAAAGATTTGCATGGTGAACCT-TCATAAA 4313 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||||||||| || ||||| ||||| | |||||| || | || Sbjct 3857 GAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 3916 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||||||||| ||| | || || ||||||||||| ||| | ||| |||||||| Sbjct 3917 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3976 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||||||| || || | ||| || || | ||||||| | || ||| ||||| Sbjct 3977 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTACAGGGTGATGGT 4036 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || | || ||||| || || ||||| Sbjct 4037 CTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 >seq483 Length=217099 Score = 131 bits (144), Expect = 1e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||||||||| || ||||| ||||| | |||||| || | || Sbjct 215576 GAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 215635 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| |||||||| Sbjct 215636 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 215695 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| |||||| | ||| || || | |||||| || | ||| ||||| Sbjct 215696 CTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGT 215755 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTG-AATCTCT 21186 |||||| || | || |||||||| || ||||| |||| || |||| Sbjct 215756 CTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTTTGCAACCTCT 215801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422206810828880