Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq348 147 2e-30 seq9955 143 3e-29 seq483 131 2e-25 seq51 102 8e-17 >seq348 Length=361584 Score = 147 bits (162), Expect = 2e-30 Identities = 114/136 (84%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||||||||| ||||| |||||| ||||||| || ||| |||||| Sbjct 109575 GGTGAGCGTGTGGTGGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCC 109516 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct 109515 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTC 109456 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 109455 ATCAGCAGAGACGAGG 109440 Score = 132 bits (146), Expect = 5e-26 Identities = 104/122 (85%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||||||| | ||| ||||||| | |||| ||| | |||||||| Sbjct 110822 AGGTGGACCTGTCCAAGGACCTGCAGC-ACTGGGACTCCCTGAAGGACGAGGAGCGCCAC 110764 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 110763 TTCATCTCTCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 110704 Query 116804 GT 116805 || Sbjct 110703 GT 110702 Score = 114 bits (126), Expect = 1e-20 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||| |||||||| | || ||||| || |||||||| || |||| ||| Sbjct 90713 GAGCCTCTGCTGCAGGAGAACCCGCAACGCTTCGTCATCTTCCCCATCCAGTACCACGAC 90772 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||||| ||||||||| Sbjct 90773 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGT 90825 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||||||||||||| | ||||| |||| |||||||| || || Sbjct 110631 GGTGGAGCGCTTCATGCAGGAGGTGCAGGTGCCGGAGGCCAGGTGTTTCTACGGGTTCCA 110572 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 110571 GATCGCCATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTGATCGACACCTAC 110517 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 117275 TTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAA 117334 ||||| ||||| || ||||||||| ||| | || | || ||||| | |||| ||| Sbjct 93687 TTCCTGACCGACGCTCTGCCGGTGAAGCTGATCGGGATGAACTGCGACATGATGAAGCAG 93746 Query 117335 TACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 |||||||||||||| ||||||||||||||||| ||||||| Sbjct 93747 TACATCGAGTTCGTGGCCGACAGGCTGCTGCTGGAGCTGG 93786 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 117275 TTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAA 117334 ||||| ||||| || ||||||||| ||| | || | || ||||| | |||| ||| Sbjct 109175 TTCCTGACCGACGCTCTGCCGGTGAAGCTGATCGGGATGAACTGCGACATGATGAAGCAG 109116 Query 117335 TACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 |||||||||||||| ||||||||||||||||| ||||||| Sbjct 109115 TACATCGAGTTCGTGGCCGACAGGCTGCTGCTGGAGCTGG 109076 >seq9955 Length=1786201 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | | || || ||| | Sbjct 4069 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGTAGGTGGAGCCCAGC 4010 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||| |||||||||||| | |||||| Sbjct 4009 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 3950 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || |||||||||||||| || | |||||||| ||||||||| Sbjct 3949 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 3890 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || || | || | ||||| || Sbjct 3889 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCAGGGGTGG 3843 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 4297 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4238 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | || || | ||||| |||||||||||| | |||||| Sbjct 4237 GACACCATTGAGAATGTGAAAGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 4178 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || |||||||||||||| || | |||||||| ||||||| | Sbjct 4177 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCTGACTACACC 4118 Query 40870 ATCCAGAAGGAGGCCACGCT 40889 |||||||| || |||| || Sbjct 4117 ATCCAGAAAGAATCCACCCT 4098 >seq483 Length=217099 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||| ||||||||| | || || || | Sbjct 215792 AAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTAGAGGTGGAGCC 215733 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | | | || | || || | ||||| |||||||||||| | || Sbjct 215732 TAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 215673 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| |||||||| || | |||||||| ||||| Sbjct 215672 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 215613 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || || || || | || | ||||| ||| Sbjct 215612 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCAGGGGTGGC 215561 >seq51 Length=752366 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATT 116744 ||||||| || ||||| ||| | | ||||||| || |||| ||||| |||| Sbjct 82544 AGGTGGATCTCTCCAAAGACCTGGCCCACTGGGACCGTCTGAAGCCGGACGAGAAACATT 82485 Query 116745 TCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804 ||||| |||||| ||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 82484 TCATCTCGCACGTTTTGGCCTTCTTCGCTGCCAGCGACGGCATCGTCAACGAGAACCTGG 82425 Query 116805 T 116805 | Sbjct 82424 T 82424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| || ||||| || || || || ||||| ||||||| || ||| || || Sbjct 77690 GGGGAGCGACTTGTGGCTTTTGCAGCTGTGGAGGGGATCTTCTTCTCTGGCTCATTTGCT 77631 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | ||||| ||||| | ||||||||||| ||||| || | | ||| || ||| Sbjct 77630 GCCATCTACTGGCTGAAGAAGAGAGGCCTCATGCCGGGCCTTACCTACTCCAATGAACTC 77571 Query 117152 ATCTCCAGGGACGAGG 117167 || |||||| |||| Sbjct 77570 ATTAGCAGGGATGAGG 77555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515153638356800