Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10130 131 1e-25 seq483 109 5e-19 seq9955 102 7e-17 >seq10130 Length=961328 Score = 131 bits (144), Expect = 1e-25 Identities = 304/451 (67%), Gaps = 7/451 (2%) Strand=Plus/Minus Query 133512 GCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTT 133570 |||||||||||||| ||||||| ||||| ||| ||||| || ||| || | ||| Sbjct 296036 GCCAGCTCGCAGCTGGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGAC-GTT 295978 Query 133571 GACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCA 133629 || | | ||| || ||| |||| ||| | | | | | || | || |||||||||| Sbjct 295977 GA-GCAGCTGCGCCTCGGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCA 295919 Query 133630 AACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCG 133689 |||||| | ||||| ||||||||| || || || ||| | ||| | ||||| Sbjct 295918 GACCCTGGACGCCGATGCCGATGGGCCGGTGGCGCTTGTTGGAGCGCTCGGCCTCGGGGA 295859 Query 133690 TGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAAT 133749 || |||| ||| | ||||||| |||||| || || ||||| | || || | Sbjct 295858 CCGGGTAGTAGTTTATCTCGATGACCTTGTTCAGGTTCTTCACGATCACCTTGGTGACGG 295799 Query 133750 GTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAA 133809 |||| |||| || ||| || | ||| |||| || |||||| ||| | Sbjct 295798 CGGCCAGCTTCTTGAAGTCGAAGGTCCGCTCG--GGCGT-GACGTACATGTTGAGGGCGA 295742 Query 133810 TACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGC 133869 | ||| || || || |||||| ||||| || | | ||| || | ||||| || Sbjct 295741 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGTGC 295682 Query 133870 AGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGAT 133929 ||||||||||||| ||||||||||||| || | || ||||| | ||||| | Sbjct 295681 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGT 295622 Query 133930 CCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 ||||||| |||||||| ||| |||||| || Sbjct 295621 CCTTGTAGAGCATGTAGGGCGTGCCGGTCTC 295591 >seq483 Length=217099 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 215580 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 215639 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || |||||||||||||| Sbjct 215640 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 215699 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 215700 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTAGGCTCCACCTCTAGGGTGATGGTCTTG 215759 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||| ||||||||| Sbjct 215760 CCAGTGAGGGTCTTGACAAAGATCTGCATG 215789 >seq9955 Length=1786201 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3861 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 3920 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| || | |||||| || || || |||||||||||||| Sbjct 3921 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 3980 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| |||||| || ||| |||| | ||| | || || Sbjct 3981 ATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTACAGGGTGATGGTCTTC 4040 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||| Sbjct 4041 CCAGTGAGGGTCTTGACGAAGATCTGCAT 4069 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| | ||| || || ||||| || ||| |||| || || ||||| ||| || Sbjct 4089 ACCAGGCGGAGGGTGGATTCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCTTCC 4148 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| || | |||||| || || || |||||||||||||| Sbjct 4149 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 4208 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 4209 ATCTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 4268 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || || || ||||| || ||||||| Sbjct 4269 CCAGTGAGGGTCTTGACAAAGATTTGCATGG 4299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433776575204560