Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9988 105 8e-18 seq9955 105 8e-18 seq9854 104 3e-17 seq10092 102 9e-17 seq674 100 3e-16 seq10055 98.7 1e-15 seq8753 98.7 1e-15 seq1813 98.7 1e-15 >seq9988 Length=1776943 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 622983 AAATATTTCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 622924 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| |||||| Sbjct 622923 TCACCACTATACTAACGAGGA 622903 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 621789 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 621730 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 621729 TATACTAACGAGGA 621716 >seq9955 Length=1786201 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || |||| |||| ||| || || | || || ||||| || ||||| || Sbjct 4107 TCTTTCTGGATGGTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 4166 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||| | || | || |||||||||| ||| || ||| | || Sbjct 4167 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTCACATTC 4226 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| | ||||| || | |||||||| ||||| || || ||||| ||| Sbjct 4227 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACA 4286 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 4287 AAGATTTGCAT 4297 >seq9854 Length=3514852 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 95520 ATTTCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 95579 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 95580 CACTATACTAACGAGGA 95596 >seq10092 Length=1086622 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||| || ||||| || | ||||||||||||| ||||||||||||||||||||| || Sbjct 65733 AAAAAGTTACTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 65792 Query 60115 ACTCACCACTATACTACCGAGGA 60137 |||||||||||||||| |||||| Sbjct 65793 ACTCACCACTATACTAACGAGGA 65815 >seq674 Length=137910 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 98414 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 98355 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 98354 TACTAACGAGGAGTG 98340 >seq10055 Length=1252790 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 334592 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 334533 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 334532 TACTAACGAGGA 334521 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 335440 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 335499 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 335500 TACTAACGAGGA 335511 >seq8753 Length=1381 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1379 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1320 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1319 TACTAACGAGGA 1308 >seq1813 Length=3534732 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1457174 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1457233 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1457234 TACTAACGAGGA 1457245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571744836210400